Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...   111   1e-23
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    36   0.61 
UniRef50_Q7S9W7 Cluster: Predicted protein; n=1; Neurospora cras...    36   0.81 
UniRef50_Q5ZJY2 Cluster: Putative uncharacterized protein; n=4; ...    34   3.3  
UniRef50_Q02BJ7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q8MTP2 Cluster: Bm101; n=1; Bombyx mori|Rep: Bm101 - Bo...    33   4.3  
UniRef50_Q9N4Q7 Cluster: Nuclear hormone receptor family member ...    33   5.7  
UniRef50_Q4UHJ4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_A6RVX5 Cluster: Predicted protein; n=1; Botryotinia fuc...    33   7.5  
UniRef50_Q6ZHJ7 Cluster: Putative uncharacterized protein OJ1218...    32   10.0 

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score =  111 bits (267), Expect = 1e-23
 Identities = 50/56 (89%), Positives = 50/56 (89%)
 Frame = +1

Query: 244  FPEVFLPRTIRLWNELPSTVFPERYDMFFFKRGLWRVLSGRQRFGSAPGTAEVHGR 411
            F   FLPRTIRLWNELPSTVFPERYDM FFKRGLWRVLSGRQR GSAPG AEVHGR
Sbjct: 930  FQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGR 985



 Score = 89.4 bits (212), Expect = 6e-17
 Identities = 40/44 (90%), Positives = 41/44 (93%)
 Frame = +2

Query: 128  CSEELFXMIPASRFYHRTARHRTRVHQYYLEPLRSSTVRFQRFF 259
            CSEELF MIPASRFYHRTARHR+RVH YYLEPLRSSTVRFQR F
Sbjct: 891  CSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSF 934


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 36.3 bits (80), Expect = 0.61
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +2

Query: 404 MXXGNHSPSGGPYARLPTR 460
           M  GNHSPSG PYA LPTR
Sbjct: 1   MGDGNHSPSGRPYASLPTR 19


>UniRef50_Q7S9W7 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 667

 Score = 35.9 bits (79), Expect = 0.81
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 543 QFQQDRRASSARGLGFANSCPSAFXFIVLVGRRAYGPPDGEWLPSXMDFSSARGRPKP-L 367
           Q QQ R   S R     NSC  A     L G  A  PP GEW P  +   S+ GRP+P +
Sbjct: 133 QQQQQRTVCSRRCPAEENSCVDARP--QLRGISAPMPPAGEWTPPLL--RSSAGRPRPVM 188

Query: 366 PTA*YS 349
           PT+ +S
Sbjct: 189 PTSTHS 194


>UniRef50_Q5ZJY2 Cluster: Putative uncharacterized protein; n=4;
           Gallus gallus|Rep: Putative uncharacterized protein -
           Gallus gallus (Chicken)
          Length = 526

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 342 ATFEEEHVIALGKHRGGELIP*PDGTWQKNLWKRTVDDRSGSR 214
           A  E++ V+ + K   GE++  P     K +WK T D+RSG +
Sbjct: 180 ANIEKKKVMQMEKEERGEVLTTPQFGKMKGMWKATEDERSGQQ 222


>UniRef50_Q02BJ7 Cluster: Putative uncharacterized protein; n=1;
           Solibacter usitatus Ellin6076|Rep: Putative
           uncharacterized protein - Solibacter usitatus (strain
           Ellin6076)
          Length = 568

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 510 WLSSPACPVETEKASEPPVIIRS 578
           WL SPA P ET +A+EPP+ + S
Sbjct: 324 WLQSPAVPRETNQAAEPPIRVLS 346


>UniRef50_Q8MTP2 Cluster: Bm101; n=1; Bombyx mori|Rep: Bm101 -
           Bombyx mori (Silk moth)
          Length = 92

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 188 GGRCDGKNEMPVSSRTI 138
           GGRCDGKNE  VSS+TI
Sbjct: 8   GGRCDGKNETMVSSQTI 24


>UniRef50_Q9N4Q7 Cluster: Nuclear hormone receptor family member
           nhr-13; n=5; Caenorhabditis|Rep: Nuclear hormone
           receptor family member nhr-13 - Caenorhabditis elegans
          Length = 425

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 165 RDAGIIXNNSSEQSRASEGDLTTQEQX--FANESTTGSKSRPAEKIRRETQRT 13
           R   ++ +N  E S   + D   QE      NEST G  S P+E +  E Q T
Sbjct: 99  RKRSVLGDNVKENSEEIQNDDDPQESDAEMENESTPGPSSEPSENVSAENQET 151


>UniRef50_Q4UHJ4 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1247

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -3

Query: 398 SAVPGADPNRCLPLNTLHKPRLKKNMS*RSGNTVEGSSFHSRMVRGKKTSGNALWMT 228
           S V G+DP+ C PLNT++ P      S  S  T +  + +  +V   KTS N + +T
Sbjct: 411 STVVGSDPSTC-PLNTVNTPEETTTSSVYSLGTTKTDTQNEDVVESCKTSDNNIEIT 466


>UniRef50_A6RVX5 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 113

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 260 CHVPSGYGMSSPPRCFPSAMTCSSSNVACGEY*AVGSGLGL---PLALLKSMXXGNHSPS 430
           C   SGY   SP  C  SA  C +++  CG Y  VGSG      P+   K+   G  +P+
Sbjct: 52  CGGDSGYTCESPKCCSESAY-CGNTSDFCGTYCDVGSGCPTAFRPVCFFKNFPLG-IAPA 109

Query: 431 GGPY 442
             PY
Sbjct: 110 CTPY 113


>UniRef50_Q6ZHJ7 Cluster: Putative uncharacterized protein
           OJ1218_D07.4; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OJ1218_D07.4 - Oryza sativa subsp. japonica (Rice)
          Length = 164

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 308 GNTVEGSSFHSRMVRGKKTSGNALWMTAVAPGSIDEL*SGGG 183
           G   EGS    R  R ++  G + W TA A G ID   SGGG
Sbjct: 2   GEGREGSGSQGRQGRWRRRWGGSWWRTAWATGRIDGGGSGGG 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,408,482
Number of Sequences: 1657284
Number of extensions: 13658615
Number of successful extensions: 31891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31878
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)