Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   3.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.5  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   8.6  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 207 NTTWSHCGHPQCV 245
           NT WSHC   QCV
Sbjct: 146 NTVWSHC---QCV 155


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 207 NTTWSHCGHPQCV 245
           NT WSHC   QCV
Sbjct: 146 NTVWSHC---QCV 155


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 359 AVGSGLGLPLALLKSMXXGNHSPSGGPYARLP 454
           +VG   G+P         G   P G PY R P
Sbjct: 53  SVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFP 84


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 244 FPEVFLPRTIRLWNELPSTVFPERYDMFFFKRGLWRVLSGRQRFGSAPGTAEVHG 408
           F ++ +  T++LW   PS+V    + + +   G W +  G   FG  P    +HG
Sbjct: 429 FEKLDVKVTVQLWLGDPSSVLSHGHRVIYSTVGHWYLDCG---FG--PWKPSMHG 478


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 392 VPGADPNRCLPLNTLHKPRLKK 327
           +P A  N C   N  HK  ++K
Sbjct: 62  IPDALKNECAKCNDKHKEGIRK 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,938
Number of Sequences: 336
Number of extensions: 3022
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)