Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    31   0.10 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    27   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.2  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    25   6.9  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   6.9  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   6.9  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 401 TSAVPGADPNRCLPLNTLHKPRLKKNMS*RSGNTVEGSSFHSRMVRGKKTSGNALW---- 234
           TS+VP    +     NTL  P L  N S    +TV  + FH+  + G  +  +  W    
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISGASSPVSNFWESEF 799

Query: 233 MTAVAPGSIDE 201
            +AV P SI +
Sbjct: 800 ASAVFPRSISK 810


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 162 DAGIIXNNSSEQSRASEGDLTTQEQXFANESTTGSKSRPAEKIRR 28
           D  I    S +++R  EGDL   E    NE     + +  +KIRR
Sbjct: 333 DEPIFICGSKDRNRTLEGDLVAVELLDVNEIMQTKREKEEKKIRR 377


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 433 T*W*VVTXXHGLQQCQGQTQTAAYRLILSTSH 338
           T W +V+  HGLQ C       A+ ++ +T H
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSATGH 232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 104 RSPSEALLCSEELFXMIPASRFYHRTARHRTRVHQYYLEPLRSSTVRFQRF 256
           ++  +A   + E +  IP+ R  H+  R   RVH   ++PL    V F +F
Sbjct: 826 KAADDAARAAIEKYTSIPSLRDLHKPTRPLKRVHWQRVDPLPGPNV-FTKF 875


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 165  RDAGIIXNNSSEQSRASEGDLT-TQEQXFANESTTGSKSR 49
            R+AG +  + S  SR S GD T +  Q   N +T  S+ R
Sbjct: 1032 REAGSLRESMSGSSRNSSGDYTDSMSQDAPNHTTEPSERR 1071


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 176 DGKNEMPVSSRTIPQSRAELRKG 108
           DG  E+PVS   I +   ELRKG
Sbjct: 40  DGLVELPVSDTPIVKRNKELRKG 62


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 271 WYVAKKPLETHCG*PQWLQVVLMNSSPVAGGA--MVKTRCRYHXEQFLRAE 125
           W V   PL+ H    ++  ++ +NS    GG   ++KT C     + L+ E
Sbjct: 377 WKVPYLPLDPHDVNSEYAAIIRVNSQSGKGGVAYLLKTNCGLDLPRALQVE 427


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 245 FQRFFCHVPSGYGMSSPPRCFPSAMTCSSSNVAC 346
           F+RF   +P+ Y +S+PP     A+   S   AC
Sbjct: 16  FRRFVHQIPTIYALSTPPGTSAVAIVRISGPNAC 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,366
Number of Sequences: 5004
Number of extensions: 50734
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)