Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1353 + 35866130-35866297,35866438-35868762                       32   0.44 
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408...    29   3.1  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    28   5.4  
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110...    28   7.1  
02_04_0048 + 19230738-19230812,19230998-19231123,19231239-192315...    27   9.4  

>02_05_1353 + 35866130-35866297,35866438-35868762
          Length = 830

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 513 ARGLGFANSCPSAFXF-IVLVGRRAYGPPDGEWLPSXMDFS 394
           A G  FAN   S   F I++VG  AYGP DG+  PS  D S
Sbjct: 190 AIGAAFANDMASLSVFSIMVVGTTAYGP-DGQPTPSFPDMS 229


>06_03_0930 -
           26038341-26038508,26039114-26039254,26040799-26040858,
           26040972-26041034,26041444-26041454,26041722-26041802,
           26042783-26043020,26043563-26043997
          Length = 398

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 425 VSGYXRPWTSAV-PGADPNRCLPLNTLHKPRLKKNMS*RSGNTVEG 291
           +SG   P  +A+ PG D N C P   L   RL+K+ S R+G   EG
Sbjct: 315 MSGIFPPIKNAMLPGHDLNLCTPTRILDMTRLEKS-SKRNGTKSEG 359


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 453  GRRAYGPPDGEWLPSXMDFSSARGRPKPLPTA*YSPQATFEEEHVIAL 310
            G R++ P D  W P    +SS   RP  + T   SP    EE+  ++L
Sbjct: 1191 GDRSFSPQDELWSPKKNRYSSNVSRPH-VKTDCQSPCCVLEEDEPLSL 1237


>08_01_0139 +
           1105857-1107008,1107124-1107328,1107583-1107768,
           1107924-1108133,1108552-1109186
          Length = 795

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 254 FFCHVPSGYGMSSPPRCFPSAMTCSSS--NVACG 349
           +  H P G G +S  R F +++ C SS  N  CG
Sbjct: 186 YLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCG 219


>02_04_0048 +
           19230738-19230812,19230998-19231123,19231239-19231505,
           19231999-19232059,19232113-19232216
          Length = 210

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 292 GAHSIAGWYVAKKPLETHCG*PQW 221
           G  ++  W   ++P++ HCG P W
Sbjct: 24  GKKNMLIWISYREPIDNHCGCPNW 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,461,276
Number of Sequences: 37544
Number of extensions: 417868
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)