Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0481
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 34 0.11
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 32 0.45
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 31 1.0
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 30 1.4
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 30 1.8
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 2.4
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 29 2.4
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 29 2.4
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 2.4
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 2.4
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 29 2.4
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 29 3.1
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 3.1
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 3.1
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 4.1
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 29 4.1
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 4.1
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.1
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 29 4.1
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.1
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1) 28 5.5
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 28 5.5
SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3) 28 7.2
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 27 9.6
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.6
SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5) 27 9.6
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 260 CHVPSGYGMSSPPRCFPSAMTCSSSNVAC 346
C P GY + +P RC S +C+SS AC
Sbjct: 2147 CSCPQGYRLENPYRCVLSNASCASSEFAC 2175
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
FLPR +RLWN LP +V R F GL
Sbjct: 202 FLPRALRLWNNLPQSVIDMRGCPEAFHSGL 231
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
FLPR +RLWN LP +V R F GL
Sbjct: 203 FLPRALRLWNNLPQSVIDMRGCPEAFHAGL 232
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 241 AFPEVFLPRTIRLWNELPSTVFPERYDMFFFKRGLWRVLS 360
AF F PRTIR WN LP+ V D+ FK L +S
Sbjct: 1643 AFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSALAPAIS 1681
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 238 SAFPEVFLPRTIRLWNELP-STVFPERYDMF 327
+ F E F P IR+WN LP ST+ D F
Sbjct: 628 NVFKESFFPHAIRMWNGLPVSTITQPTIDTF 658
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 238 SAFPEVFLPRTIRLWNELP-STVFPERYDMF 327
+ F E F P IR+WN LP ST+ D F
Sbjct: 210 NVFKESFFPHAIRMWNGLPVSTITQPTIDTF 240
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +1
Query: 241 AFPEVFLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
AF F PRTIR WN LP+ V D+ FK L
Sbjct: 1089 AFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1122
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 238 SAFPEVFLPRTIRLWNELPSTVFP 309
+AF F RTI +WN LP VFP
Sbjct: 824 NAFLFSFYSRTIPVWNALPQAVFP 847
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVF-PERYDMFFFKRG 342
F PRTIR WN LPS V D F K G
Sbjct: 461 FFPRTIRTWNLLPSEVVESSSIDSFKSKTG 490
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 874 FFPRTIRTWNLLPSEV 889
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 154 FFPRTIRTWNLLPSEV 169
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 199 FFPRTIRTWNLLPSEV 214
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 199 FFPRTIRTWNLLPSEV 214
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +1
Query: 244 FPEVFLPRTIRLWNELPSTVFPERYDMFFFKRGLWRVLSGRQRFGSAPGTAEV 402
F F+PR IRLWN L TV Y FF L +L + A T +V
Sbjct: 744 FKYSFVPRAIRLWNSLEVTVVLAAY--FFLLYDLATLLGAKPGRRLAKDTFDV 794
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 108 FFPRTIRTWNLLPSEV 123
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 565 FFPRTIRTWNLLPSEV 580
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LPS V
Sbjct: 793 FFPRTIRTWNLLPSEV 808
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PR IR+WN LPS V
Sbjct: 143 FFPRAIRIWNLLPSNV 158
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PR IR+WN LPS V
Sbjct: 462 FFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PR IR+WN LPS V
Sbjct: 1448 FFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PR IR+WN LPS V
Sbjct: 408 FFPRAIRIWNLLPSNV 423
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 137 FFPRTIRHWNTLPNELV-ELGSIEHFKRDL 165
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 338 FFPRTIRHWNTLPNELV-ELGSIEHFKRDL 366
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 324 FFPRTIRHWNTLPNELV-ELGSIEHFKRDL 352
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 256 FLPRTIRLWNELPS 297
+ PRT++LWN LPS
Sbjct: 750 YFPRTVKLWNSLPS 763
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 544 FFPRTIRHWNTLPNELV-ELGSIEHFKRDL 572
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 241 FFPRTIRHWNTLPNELV-ELDSIEHFKRDL 269
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 787 FFPRTIRHWNTLPNELV-ELGSIEHFKRDL 815
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 256 FLPRTIRLWNELPS 297
+ PRT++LWN LPS
Sbjct: 253 YFPRTVKLWNSLPS 266
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGL 345
F PRTIR WN LP+ + E + FKR L
Sbjct: 629 FFPRTIRHWNTLPNELV-ELGSIEHFKRDL 657
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 256 FLPRTIRLWNELPS 297
+ PRT++LWN LPS
Sbjct: 253 YFPRTVKLWNSLPS 266
>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Frame = +3
Query: 192 GLEFINTTWSHCGHPQ-----CVSRGFFATYH 272
G +I TW C Q CVS+ F A YH
Sbjct: 957 GTNYIRYTWQQCAKKQKDVIKCVSKPFLAVYH 988
>SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)
Length = 202
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Frame = +2
Query: 107 SPSEALLCSEELFXMIPASRFYHRTARHRTRVHQYYLEPLRSST-VRFQRFFCHVPSGYG 283
+P E LC ++ IP + + + V + Y + + +R R C G
Sbjct: 70 TPDEDFLCERKVSTAIPVPQKRRKALLRTSGVKRIYKKEAQDCMELRLSRILC------G 123
Query: 284 MSSPPRCFPSAMTCSSSNVAC 346
S C+P C + + C
Sbjct: 124 CSCEDECYPETCECILNGIGC 144
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTV 303
F PRTIR WN LP+ V
Sbjct: 240 FFPRTIRTWNLLPAQV 255
>SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3)
Length = 225
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 161 SRFYHRTARHRTRVHQYYLEPLRSSTVRFQRF 256
S+ YH +R+ R YY +++ TV FQ+F
Sbjct: 171 SQLYHHHSRYHNR---YYFSSMKTITVTFQKF 199
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Frame = +2
Query: 107 SPSEALL-CSEELFXM--IPASRFYHRTARHR------TRVHQYYLEPLR 229
SPS LL CS F + P+S FY+R RH R H +Y LR
Sbjct: 1221 SPSSFLLPCSPSSFSLPCSPSSSFYYRVLRHHPFHYRVLRHHPFYYRVLR 1270
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 162 LVFTIAPPATGLEFINTTWSHCGHP-QCVSRGFFATYHPAME 284
+V+T+ PP +G +I + C P QC + +H A+E
Sbjct: 144 VVYTLLPPLSGARYIRVVATECSPPGQCCAS---LKFHKALE 182
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 256 FLPRTIRLWNELPSTVFPERYDMFFFKRGLWRV 354
F RTI WN LP+ +F E + FK + R+
Sbjct: 847 FFSRTIIQWNNLPALLFNEPCSLPIFKDKISRL 879
>SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)
Length = 582
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 300 GVSRAL*HVLLQTWLVESIKR*AAVWVCPWHC*SPWXXVTTHHQVGRMLV 449
G S A+ +LL +W + KR + PW C S W H ++G + V
Sbjct: 200 GYSAAVTDILLASWSESTKKR----YQGPWKCWSQWCSSRDHIKLGDLPV 245
>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 165 RDAGIIXNNSSEQSRASEGDLTTQEQXFANESTTGSKSR-PAEK 37
RD+GI+ N+SS + + GD N STT + R P K
Sbjct: 165 RDSGIVRNHSSHHNTKNNGDNNNTIVTGINSSTTINNIRMPTSK 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,878,009
Number of Sequences: 59808
Number of extensions: 414555
Number of successful extensions: 1019
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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