Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear recep...    33   0.17 
AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear recep...    33   0.17 
AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormo...    33   0.17 
AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormo...    33   0.17 

>AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 327

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 165 RDAGIIXNNSSEQSRASEGDLTTQEQX--FANESTTGSKSRPAEKIRRETQRT 13
           R   ++ +N  E S   + D   QE      NEST G  S P+E +  E Q T
Sbjct: 12  RKRSVLGDNVKENSEEIQNDDDPQESDAEMENESTPGPSSEPSENVSAENQET 64


>AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 415

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 165 RDAGIIXNNSSEQSRASEGDLTTQEQX--FANESTTGSKSRPAEKIRRETQRT 13
           R   ++ +N  E S   + D   QE      NEST G  S P+E +  E Q T
Sbjct: 100 RKRSVLGDNVKENSEEIQNDDDPQESDAEMENESTPGPSSEPSENVSAENQET 152


>AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform b protein.
          Length = 425

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 165 RDAGIIXNNSSEQSRASEGDLTTQEQX--FANESTTGSKSRPAEKIRRETQRT 13
           R   ++ +N  E S   + D   QE      NEST G  S P+E +  E Q T
Sbjct: 99  RKRSVLGDNVKENSEEIQNDDDPQESDAEMENESTPGPSSEPSENVSAENQET 151


>AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform a protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 165 RDAGIIXNNSSEQSRASEGDLTTQEQX--FANESTTGSKSRPAEKIRRETQRT 13
           R   ++ +N  E S   + D   QE      NEST G  S P+E +  E Q T
Sbjct: 99  RKRSVLGDNVKENSEEIQNDDDPQESDAEMENESTPGPSSEPSENVSAENQET 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,529
Number of Sequences: 27780
Number of extensions: 305165
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)