Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 435 PPDGEWLPSXMDFSSARG 382
           PPD  W P  + F++A G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 263  GKKTSGNALWMTAVAPGSIDEL*SGGGRCDGKNEMPVSSRT 141
            G KT+G A++   +AP +I    S G +       P  + T
Sbjct: 1264 GLKTTGAAVYARVIAPTTITSSQSPGNQQQTIQTQPSRNNT 1304


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 305 NTVEGSSFHSRMVRGKKTSGNALWMTAVAPGSI 207
           N +     H R   GKK+  NA    AV   SI
Sbjct: 358 NDLAAHKMHGRGRSGKKSKFNAAVAAAVQSSSI 390


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 459 LVGRRAYGPPDGEWLP 412
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 186 ATGLEFINTTWSHCGHPQCVS 248
           A  L+    TW+ CG P+ V+
Sbjct: 513 AKRLDHGRKTWTFCGTPEYVA 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,509
Number of Sequences: 438
Number of extensions: 3569
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)