Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0481
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59220.1 68416.m06602 pirin, putative similar to SP|O00625 Pi...    29   1.9  
At2g28780.1 68415.m03499 expressed protein                             29   3.4  
At3g09580.1 68416.m01138 amine oxidase family protein low simila...    28   5.9  

>At3g59220.1 68416.m06602 pirin, putative similar to SP|O00625 Pirin
           {Homo sapiens}; contains Pfam profile PF02678: Pirin
          Length = 287

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 229 VIHSAFPEVFLPRTIRLWNELPST 300
           +IHS FPE  +   ++LW  LPST
Sbjct: 103 IIHSEFPEEEVNNGLQLWINLPST 126


>At2g28780.1 68415.m03499 expressed protein
          Length = 796

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 600 CFLFYFFMIE*LLVALRPFQFQQDRRASSARGLGFANSCPSAFXFIVLVGRRAYGPP 430
           CF+F  F+    L  L  F F      S ++  G A    +A   ++++GR+ +GPP
Sbjct: 453 CFVFQKFLTVRFLSLLPWFLFSSF--LSRSKMYGQAGGISAAIGAVLILGRKNFGPP 507


>At3g09580.1 68416.m01138 amine oxidase family protein low
           similarity to SP|P28553 Phytoene dehydrogenase,
           chloroplast precursor (Phytoene desaturase) from Glycine
           max; contains Pfam profile PF01593 amine oxidase,
           flavin-containing
          Length = 477

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 401 TSAVPGADPNRCLPLNTLHKPRLKKNMS*RSGNTVEGSSFHSRMVRGKK 255
           T  +  A PN+C P + +  PR+   +   SG+ +  ++F   +V G++
Sbjct: 417 TYRIQFAQPNQCPPTDLVKSPRVGSGLY-LSGDYMTSATFDGALVSGRR 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,937
Number of Sequences: 28952
Number of extensions: 294622
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)