Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0479
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    25   0.59 
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    25   0.59 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   1.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.6  

>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 445 RIYTLFSFG--ITYLVCICRFMGRL 513
           RIY  +SFG  I   VC+C F G++
Sbjct: 319 RIYFYWSFGFLIVRTVCLCLFGGKV 343


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 445 RIYTLFSFG--ITYLVCICRFMGRL 513
           RIY  +SFG  I   VC+C F G++
Sbjct: 319 RIYFYWSFGFLIVRTVCLCLFGGKV 343


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 445 RIYTLFSFG--ITYLVCICRFMGRLY 516
           R+Y  +SF   IT +VC+C F  +++
Sbjct: 317 RLYFYWSFALLITRIVCLCLFGAKVH 342


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 192 SKALFFLKTDKPSSSHLVSIVF 127
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 192 SKALFFLKTDKPSSSHLVSIVF 127
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 192 SKALFFLKTDKPSSSHLVSIVF 127
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 192 SKALFFLKTDKPSSSHLVSIVF 127
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 274 TAPQISSNSRNFHQLKEEP 218
           T    + N+  +H++KEEP
Sbjct: 35  TEQNYTHNNEMYHRVKEEP 53


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 274 TAPQISSNSRNFHQLKEEP 218
           T    + N+  +H++KEEP
Sbjct: 35  TEQNYTHNNEMYHRVKEEP 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,650
Number of Sequences: 336
Number of extensions: 3194
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)