Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0479
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 81 6e-16
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 81 1e-15
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 73 3e-13
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 32 0.38
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 29 3.5
02_04_0430 + 22834405-22834839 29 3.5
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 29 4.7
09_02_0154 + 5055946-5058721,5058754-5058770 29 4.7
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 5.1
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 6.2
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 6.2
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 28 8.1
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 81.4 bits (192), Expect = 6e-16
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1
Query: 16 FDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTD 195
F TVE FW Y H+ P L D +FK+GIRP+WED AN+ GG+W+I +K T
Sbjct: 81 FSTVESFWVCYCHLTRPVSLPSPTDLHLFKEGIRPLWEDPANRSGGKWIIRFKK----TV 136
Query: 196 LDRFWLDVVLLLIGENFENS 255
RFW D+VL+L+G+ + S
Sbjct: 137 SGRFWEDLVLVLVGDQLDYS 156
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI-HGKIGFQVHRDTMVKH 431
D++CG V++VR D +++W +A A + + +K L + H + D ++
Sbjct: 157 DDVCGVVLSVRFNEDILSVWNRNASDHQAVMTLRDSIKRHLKLPHSYLMEYKPHDASLRD 216
Query: 432 SSATKNLY 455
+S+ +N +
Sbjct: 217 NSSYRNTW 224
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/85 (42%), Positives = 50/85 (58%)
Frame = +1
Query: 1 RHETTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK 180
R TFDTVE+FW LY I PS++ D+ +FK G+ P WED GG+W + +K
Sbjct: 57 RKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRK 116
Query: 181 QRFTDLDRFWLDVVLLLIGENFENS 255
T L+ WL+ ++ LIGE F+ S
Sbjct: 117 ---TTLENMWLETLMALIGEQFDES 138
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +3
Query: 240 KFREFDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRD 416
+F E +EICG V +VR + DK+A+WT A + + IGKK KE + + K+ + H D
Sbjct: 134 QFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDD 192
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/79 (44%), Positives = 45/79 (56%)
Frame = +1
Query: 13 TFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFT 192
TF TVEDFW LY++I PS+L G D+ FK I P WED GG+W S + +
Sbjct: 83 TFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS-- 140
Query: 193 DLDRFWLDVVLLLIGENFE 249
D WL +L +IGE F+
Sbjct: 141 --DTMWLHTLLAMIGEQFD 157
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +3
Query: 255 DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHS 434
DEICGAVV+VR K ++IAIWT +A + A I IGK+ KE L IGF VH D + K+
Sbjct: 160 DEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYE 219
Query: 435 SATK 446
++
Sbjct: 220 DMSE 223
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 300 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATKNLYTV*FWHYI 479
++A WT A+K + G L G+ VHR VKH +A+K +
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNASKKYMVACIGKSL 239
Query: 480 SCLYLQI---YGTTV 515
+ L+ YGTT+
Sbjct: 240 TMWELRSWRPYGTTI 254
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 343 VACCFIASAVQIAILSTFGLTLTTAPQISSNSRNFHQLKEEPHLTRTY 200
VA + AV +A++S+FG+ + P S N + +EP + T+
Sbjct: 336 VARASLQGAVLLALVSSFGIMMNRLPDAGSMPVNKTETCKEPQMPETF 383
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 176 FSRLISHLPPILLASSSHIGRM 111
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -3
Query: 618 SVKYNFILLL*LRKFSLWDVLNIFYSIKLNYF 523
+V +N IL+ LR FSL +L +F + LNYF
Sbjct: 84 AVVFNRILVFSLRIFSLAAILCVFGILPLNYF 115
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 328 IASAVQIAILSTFGLTLTTAPQ-ISSNSRNFHQLKEEPHLTRTYLNQ*SVVFSQD 167
I +A+ L+ G L P + N QLK E H+ + +L Q + FSQD
Sbjct: 13 IGAALGREALNVVGTQLQKQPPTLVDVENNMRQLKIEFHVMKAFLTQQQIHFSQD 67
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 24.2 bits (50), Expect(2) = 5.1
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 5 TRLHSTQLKTFGDCTIILSYRQNFAKVMTMQYSSKAFVLC 124
TRL + + CT++ +R++ +++T+Q+S C
Sbjct: 277 TRLKTAKRCLIILCTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 110 AFVLCGKTMLTRWEEDGLSVLRKN 181
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 50 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 193
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 216
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>08_02_1482 - 27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 73 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRF-WLDVVLLLIGENFE 249
LR+ D ++KQ ++ + + ++ RW I L KQR L R W + I E+
Sbjct: 868 LRRERDM-LYKQMLKKLTNGEKERVYARWGIDLSSKQRRLQLSRLVWTQTDMEHIRESAS 926
Query: 250 NSMRFVVLL 276
+ + LL
Sbjct: 927 LVAKLIELL 935
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,673
Number of Sequences: 37544
Number of extensions: 297738
Number of successful extensions: 661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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