Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0479
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)                  73   3e-13
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   32   0.39 
SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)             31   0.89 
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   6.3  
SB_6925| Best HMM Match : DED (HMM E-Value=0.0028)                     28   8.3  

>SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)
          Length = 263

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/46 (67%), Positives = 35/46 (76%)
 Frame = +1

Query: 109 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 246
           GI PMWED  NK GGRWLI+  K QR +DLDRFWL+ +L LIGE F
Sbjct: 2   GIEPMWEDKRNKDGGRWLINTNKNQRQSDLDRFWLETLLCLIGEAF 47



 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 243 FREFDE-ICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 371
           F E+ E +CGAVV +R K DKIA+WT +A  +  T  IG  +++
Sbjct: 47  FGEYSEGVCGAVVQIRNKGDKIAVWTGNATDEEGTRRIGWVIRD 90


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = -3

Query: 195 ISKALFFLKTDKPSSSHLVSIVFPHRTNALLEYCIVMTLAKF 70
           IS+ LFFL+  + +   +VS++F +R++   ++C+   + +F
Sbjct: 88  ISQTLFFLQFTRVTGKGIVSLLFSNRSDLFSKHCLAANIKEF 129


>SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)
          Length = 219

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = -1

Query: 341 RMLLHCISCPNSNFIYFWSDINNSTTNLIEFSKFSP-----IKRRTTSNQNLSKSVKRCF 177
           R+  + ++ P SNF+      N+    LI   +F P     +  R  SNQ+  K V +C 
Sbjct: 40  RLRSNHVTTPTSNFLELLRKENDPDYKLIPSPEFKPGGYYVLPTRPQSNQSSIKPVDKCT 99

Query: 176 FSRLISHLPPILLASSSHIGRMPC 105
            S L+   P   L  +    R+ C
Sbjct: 100 SSYLLRRRPQKQLCKNGSRRRIFC 123


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 49  HHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQR 186
           H +K   +LR+  D+    +    + +D   ++ G  LISLEK QR
Sbjct: 81  HGVKTTKDLREIIDFVPSVEAGENLLQDYVREISGLLLISLEKYQR 126


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 277 TTAPQISSNSRNFHQLKEEPHLTRT 203
           T APQ+  N   FHQ+  +P  ++T
Sbjct: 591 TAAPQVGQNQAPFHQMNGDPSASQT 615


>SB_6925| Best HMM Match : DED (HMM E-Value=0.0028)
          Length = 229

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 154 RWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSM 258
           R + +L  K  F  + RF  D++   IG+ +ENS+
Sbjct: 24  RSISTLLTKDNFKAMKRFLYDIISTKIGDRYENSL 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,320,903
Number of Sequences: 59808
Number of extensions: 368192
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)