Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0479
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 101 4e-22
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 98 5e-21
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 97 8e-21
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 85 6e-17
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 79 4e-15
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 79 4e-15
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 79 4e-15
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 68 7e-12
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 68 7e-12
U29488-11|AAK93842.1| 753|Caenorhabditis elegans Hypothetical p... 30 1.4
AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical ... 29 2.4
AF016415-5|AAW88414.1| 305|Caenorhabditis elegans Serpentine re... 29 2.4
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 29 4.2
Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical pr... 28 7.3
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 101 bits (243), Expect = 4e-22
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = +1
Query: 16 FDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTD 195
FDTVEDFW LY+HI+ L G DY +FK+GI+PMWED N GGRWL+ ++K++R
Sbjct: 61 FDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQL 120
Query: 196 LDRFWLDVVLLLIGENFE 249
LD +WL++++ ++GE F+
Sbjct: 121 LDHYWLELLMAIVGEQFD 138
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Frame = +3
Query: 240 KFREF-DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVH 410
+F E+ D ICGAVVNVR K DK+++WT DA + + IG+ LK++L I + ++VH
Sbjct: 136 QFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVH 195
Query: 411 RDTMVKHSSATK 446
+D+ + SS K
Sbjct: 196 KDSSARTSSTVK 207
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Frame = +1
Query: 16 FDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK-QRFT 192
FDTVEDFW LY+HI+ L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T
Sbjct: 61 FDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRT 120
Query: 193 D-LDRFWLDVVLLLIGENFE 249
LD +WL++++ ++GE F+
Sbjct: 121 QLLDHYWLELLMAIVGEQFD 140
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Frame = +3
Query: 240 KFREF-DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVH 410
+F E+ D ICGAVVNVR K DK+++WT DA + + IG+ LK++L I + ++VH
Sbjct: 138 QFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVH 197
Query: 411 RDTMVKHSSATK 446
+D+ + SS K
Sbjct: 198 KDSSARTSSTVK 209
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 97.5 bits (232), Expect = 8e-21
Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 FDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK--QRF 189
FDTVEDFW LY+HI+ L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR
Sbjct: 61 FDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRR 120
Query: 190 TD-LDRFWLDVVLLLIGENFE 249
T LD +WL++++ ++GE F+
Sbjct: 121 TQLLDHYWLELLMAIVGEQFD 141
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Frame = +3
Query: 240 KFREF-DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVH 410
+F E+ D ICGAVVNVR K DK+++WT DA + + IG+ LK++L I + ++VH
Sbjct: 139 QFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVH 198
Query: 411 RDTMVKHSSATK 446
+D+ + SS K
Sbjct: 199 KDSSARTSSTVK 210
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 84.6 bits (200), Expect = 6e-17
Identities = 36/82 (43%), Positives = 52/82 (63%)
Frame = +1
Query: 13 TFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFT 192
TF +V +FW L+ IK PS L DY VF+ GI PMWE N+ GGRWLI++EK +
Sbjct: 45 TFSSVGEFWALHDSIKPPSGLNPPSDYNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPE 104
Query: 193 DLDRFWLDVVLLLIGENFENSM 258
+D W ++++ +IGE F + +
Sbjct: 105 IMDTIWTEILMAMIGEQFSDDI 126
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 249 EFDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 377
+ + +CG V NVR K KI++WT ++ A + IG LK+ L
Sbjct: 125 DIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVL 167
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 13 TFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFT 192
TF+TV +FW LY I+ PS L DY VF+ I+PMWE N GGRWLI ++K +
Sbjct: 40 TFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPE 99
Query: 193 DLDRFWLDVVLLLIGENFENSMRFV 267
+D WL++++ L+GE F M +
Sbjct: 100 MVDAIWLEILMALVGEQFGKDMESI 124
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 246 REFDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 377
++ + ICG V NVR K KI++WT D + IG LKE+L
Sbjct: 119 KDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 78.6 bits (185), Expect = 4e-15
Identities = 38/85 (44%), Positives = 48/85 (56%)
Frame = +1
Query: 13 TFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFT 192
TF+TV +FW Y I PS L DY VF+ I+P WE N GGRWLI + K +
Sbjct: 37 TFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPE 96
Query: 193 DLDRFWLDVVLLLIGENFENSMRFV 267
LD WL+++L LIGE F M +
Sbjct: 97 VLDAVWLEILLALIGEQFGKDMESI 121
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Frame = +3
Query: 246 REFDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----I 395
++ + ICG V NVR + KI++WT + + IG LKE+L H K I
Sbjct: 116 KDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVI 175
Query: 396 GFQVHRDTMVKHSSATKNLYTV 461
+Q HR+ + K +SA K +++
Sbjct: 176 HYQTHRNCVKKTTSALKYKFSL 197
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 78.6 bits (185), Expect = 4e-15
Identities = 38/85 (44%), Positives = 48/85 (56%)
Frame = +1
Query: 13 TFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFT 192
TF+TV +FW Y I PS L DY VF+ I+P WE N GGRWLI + K +
Sbjct: 76 TFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPE 135
Query: 193 DLDRFWLDVVLLLIGENFENSMRFV 267
LD WL+++L LIGE F M +
Sbjct: 136 VLDAVWLEILLALIGEQFGKDMESI 160
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Frame = +3
Query: 246 REFDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----I 395
++ + ICG V NVR + KI++WT + + IG LKE+L H K I
Sbjct: 155 KDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVI 214
Query: 396 GFQVHRDTMVKHSSATKNLYTV 461
+Q HR+ + K +SA K +++
Sbjct: 215 HYQTHRNCVKKTTSALKYKFSL 236
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 78.6 bits (185), Expect = 4e-15
Identities = 38/85 (44%), Positives = 48/85 (56%)
Frame = +1
Query: 13 TFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFT 192
TF+TV +FW Y I PS L DY VF+ I+P WE N GGRWLI + K +
Sbjct: 37 TFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPE 96
Query: 193 DLDRFWLDVVLLLIGENFENSMRFV 267
LD WL+++L LIGE F M +
Sbjct: 97 VLDAVWLEILLALIGEQFGKDMESI 121
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Frame = +3
Query: 246 REFDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHGK-----I 395
++ + ICG V NVR + KI++WT + + IG LKE+L H K I
Sbjct: 116 KDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHSKPLFDVI 175
Query: 396 GFQVHRDTMVKHSSATKNLYTV 461
+Q HR+ + K +SA K +++
Sbjct: 176 HYQTHRNCVKKTTSALKYKFSL 197
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 67.7 bits (158), Expect = 7e-12
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 22 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 201
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 202 RFWLDVVLLLIGENF 246
R W ++++ +IGE F
Sbjct: 122 RIWENLLMAIIGEQF 136
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 255 DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE--QLGIHGKIGFQVHRDTMVK 428
DE+CGAV ++R + D I++W +A T I + L+ QL + + ++ H D +
Sbjct: 140 DELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRD 199
Query: 429 HSS---ATKNL 452
SS TKN+
Sbjct: 200 QSSYRHTTKNI 210
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 67.7 bits (158), Expect = 7e-12
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 22 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 201
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 202 RFWLDVVLLLIGENF 246
R W ++++ +IGE F
Sbjct: 122 RIWENLLMAIIGEQF 136
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 255 DEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE--QLGIHGKIGFQVHRDTMVK 428
DE+CGAV ++R + D I++W +A T I + L+ QL + + ++ H D +
Sbjct: 140 DELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRD 199
Query: 429 HSS---ATKNL 452
SS TKN+
Sbjct: 200 QSSYRHTTKNI 210
>U29488-11|AAK93842.1| 753|Caenorhabditis elegans Hypothetical
protein C56C10.11 protein.
Length = 753
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 305 NFIYFWSDINNSTTNLIEFSKFSPIKRRTTSNQNLSKSVKRC--FFSRLISHLPPIL 141
NF WS +S T L + F PI+ N+++S + C +F+R+ + P++
Sbjct: 121 NFYGIWSRYLDSVTRLAQLFLFVPIRDGYEPNKSVSVLQRECYEYFTRVAAVFSPLI 177
>AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical
protein Y105E8A.5 protein.
Length = 576
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 483 KICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCRVSLAVLSVFS 355
KI N+ T CI +++ A PL + V+G + C + L F+
Sbjct: 180 KIANSATITCIAKLTKSTAEPLDILVIGTEHCEIFLIDSQAFT 222
>AF016415-5|AAW88414.1| 305|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 30 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 609 YNFILLL*LRKFSLWDVLNIFYSIKLNYFN*IQSSHKSADTNKICNAKTKQCIDS 445
YN+ +L FS+ ++I SIKL ++N QS + + NK+ A +D+
Sbjct: 179 YNYFMLQRSIVFSINVFVSIVLSIKLLFWNKKQSQQQHKNNNKLSKANRLALLDT 233
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -1
Query: 257 IEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSH 123
+E K +KR + K C F + +S +L++SS H
Sbjct: 1348 VEVKKNKGVKRSVVKKELTFADYKNCLFDKTVSRKQQMLISSSKH 1392
>Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical
protein W01A8.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 76 RQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVV 222
+ GH Y K+ + WE + N G+W+ K++ +D+FW++V+
Sbjct: 227 KAGH-YQHLKKILYKKWESENN---GKWI-----KRKSNQVDKFWIEVI 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,594
Number of Sequences: 27780
Number of extensions: 287546
Number of successful extensions: 759
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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