Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0478
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.7  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 133 RCDADDDHRVTLAEWGKCLELDELEMEERCDDFNENAEHY 252
           R D D   R+     GK L+ D++  ++R DD   N  H+
Sbjct: 178 RDDTDMHGRIKSERNGKDLDDDDMNDDDRKDDLLGNNMHH 217


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 533 FSHLIFTIHILF 498
           ++ +IFT+H+LF
Sbjct: 118 YAFIIFTVHLLF 129



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 603 FLTYLXHVSILMIKFFF*LVL*SIFTFNFHYTYFILRTK*LL 478
           F+ +  H+  L+  ++F + L  +    + Y  FI+ T  LL
Sbjct: 120 FIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLL 161


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 177 GQVPRTRRVGNGGA 218
           G+ PRTRRV   GA
Sbjct: 206 GRSPRTRRVKKPGA 219


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 181 KCLELDELEMEERCDDFNENAEHYFSAPM 267
           KC  L E++    CD      E Y   P+
Sbjct: 412 KCGSLREIKEVSDCDSSESRKEVYVRVPL 440


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,165
Number of Sequences: 336
Number of extensions: 2700
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)