Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0478
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   6.0  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 357 INKIRRSYLLRYFSVFIYAQNMILYS*VLKVHFNLF 464
           ++K   SYL +YF  F YA++   Y   +   F+LF
Sbjct: 395 VHKNNNSYLDQYFLDFDYARDAFSYFKAIWAEFSLF 430


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 QN*TFLFTKILLSLHLCAEYDI 427
           +N  FLFT ILL  +LC + D+
Sbjct: 777 RNQPFLFTNILLRFYLCLKDDV 798


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 532 FHI*FSLYIFYSKDKVIIKSLLQNRLKCTFSTYEYNII 419
           F++ F    FY  D ++   LLQ  L+  F+  E+ II
Sbjct: 558 FYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHIII 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,179
Number of Sequences: 5004
Number of extensions: 43781
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)