Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0478
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   2.7  
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    29   4.7  
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519...    29   4.7  
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    28   8.3  

>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 103 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 198
           L H +  FL  CD+ D H   L+  EW   L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 IAPFLDRCDADDDHRVTLAEWGKCLELDELEME 213
           +A  +++C A D ++V    W  C+E+ E   E
Sbjct: 273 LASVIEKCKATDQNKVLCPPWSWCVEIAEAAFE 305


>01_06_1547 -
           38150814-38151488,38151608-38151666,38151774-38151919,
           38152078-38152274,38152542-38152920,38153000-38153031
          Length = 495

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 52  RFVSRHELFPIRAPLMALEHCIAPF-LDRCDADDDHRVTLAEWGKCLELDELEMEERCDD 228
           R +   E  P+  P    E  +A   LD+     D +    +W +C+E   L  E   D 
Sbjct: 109 RLIPEREPVPLVWPADEAERLLAGTELDKI-VKQDRQFICEDWKECIEPLILSGELEVDP 167

Query: 229 FNENAEHYFSAPMMLQA 279
            + + E+YFSA  +L +
Sbjct: 168 DDFSLENYFSAKSLLSS 184


>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 182 LPHSARVTRWSSSASQRSRNGAMQCSRAISGA 87
           LP S +V RWSSSA+  +R  A    R +  A
Sbjct: 15  LPASLQVGRWSSSAAMSARPVAFSLRRPVLAA 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,075
Number of Sequences: 37544
Number of extensions: 254119
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)