Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0478
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       36   0.042
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.097
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)               34   0.097
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               31   0.68 
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)       28   8.4  

>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  IWKWCDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKCL- 189
           +W++ + DA  ND+ +  HE   +++ +   E C+  F+D CD D    +T  EW  C  
Sbjct: 727 MWEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNACFP 782

Query: 190 -ELDELEMEE 216
             L+ LE+ +
Sbjct: 783 TRLEVLEVSQ 792


>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 16  WKWCDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKC 186
           W++ + DA  ND+ +  HE   +++ +   E C+  F+D CD D    +T  EW  C
Sbjct: 1   WEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 53


>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 187

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 4   HEAIWKWCDLDAQTNDRFVSRHELFP-IRAPLMAL--EHCIAPFLDRCDADDDHRVTLAE 174
           H  +WK+  LD    D F+   EL   +R    A+  + C   F+  CD + D R++  E
Sbjct: 47  HLLMWKFNQLDTNA-DYFLEWSELHGFLRMSKKAIHPKKCSKTFVGYCDENQDQRISRNE 105

Query: 175 WGKCLELDELE 207
           W  C  + E++
Sbjct: 106 WYACFGVQEIK 116


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +1

Query: 16  WKWCDLDAQTNDRFVSRHELFPIRAPLMALE-----HCIAPFLDRCDADDDHRVTLAEWG 180
           WK+  LD+   DR ++  E F +    M  +      C    L  CD D D+ ++L EW 
Sbjct: 373 WKFHQLDSN-RDRIINSREFFVVSMKKMLGKIKRGRKCSRKLLADCDFDKDNGLSLNEWS 431

Query: 181 KCL 189
            CL
Sbjct: 432 YCL 434


>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
          Length = 217

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 10  AIWKW-CDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKC 186
           AI KW  D +    D  +   E+  I A +M  E C A FL  CD +    ++ +EW  C
Sbjct: 144 AIAKWEFDRNDLDKDNALEGAEIDNILA-MMIYEPCAAGFLWSCDLNRKQGISRSEWDMC 202

Query: 187 LELDELEMEER 219
             L E E   R
Sbjct: 203 FTLAEREFPLR 213


>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 10  AIWKWCDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKC 186
           A W++  +D    D  +S  E+  I  PL+  E CI  F+  CD + +  +   EW  C
Sbjct: 122 AQWEFDRVDFN-RDGVLSGREINSIIGPLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179


>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
          Length = 452

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 EHCIAPFLDRCDADDDHRVTLAEWGKCLEL 195
           E+CI  F ++CDA  D + +L E     +L
Sbjct: 53  ENCITQFFEKCDATKDGQFSLLESANASQL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,237
Number of Sequences: 59808
Number of extensions: 289485
Number of successful extensions: 520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)