Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0477
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.2  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   4.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 122 VLLFYTFKRAILVCTYI 72
           +L+F+ F  AIL+  YI
Sbjct: 242 ILIFFIFPLAILIIVYI 258


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 480 RQCFSKYDRVPIRRFIVALLRLTSALNLI 394
           R C +K+D VP  + ++ +    S  N++
Sbjct: 422 RNCIAKFDIVPNGKTVIPIKISPSTANMV 450


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 179 LLNMFLKFLIFRKHIQFC 232
           + + F  F+IF  H+ FC
Sbjct: 166 IYHFFCAFIIFTMHLLFC 183


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 687 YIFYGCFFVNCTTIPDIF 634
           ++ +G FF+N ++IP  F
Sbjct: 568 FLLFGGFFLNVSSIPIYF 585


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 687 YIFYGCFFVNCTTIPDIF 634
           ++ +G FF+N ++IP  F
Sbjct: 568 FLLFGGFFLNVSSIPIYF 585


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,063
Number of Sequences: 336
Number of extensions: 3438
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)