Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0477
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.9  

>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 477 QCFSKYDRVPIRRFIVALLRLTSALNLINNFYPNMKQTIIHSHKIINL 334
           + FS  D   +   I A ++L+   ++I NFY +   T + S ++INL
Sbjct: 176 ESFSYEDAFTLLPIIAATIQLSDLPDVILNFYNSAGITPLESSRLINL 223


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 447  IRRFIVALLRLTSALNLINNFYPNMKQTIIHS 352
            +RR  VAL R  S+L ++ N  P M++ I +S
Sbjct: 1735 LRRLNVALTRAKSSLYIVGNSKPLMQEDIFYS 1766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,946
Number of Sequences: 5004
Number of extensions: 53607
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)