Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0477
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51995-7|AAA96075.1|  191|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U51995-7|AAA96075.1|  191|Caenorhabditis elegans Hypothetical
           protein F07G6.2 protein.
          Length = 191

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +1

Query: 1   YRPRNPLYTKFYENR*SRFRDSD------YIYVHTRIARLKV*NNNTKLIVFVKITSRVV 162
           +RP  P Y    +NR +R   +D      + +  T  + +++ N+ T+L+     +  VV
Sbjct: 68  FRPSTPEYPMTSQNRFARMLQTDIVTANNFTFTSTTTSAVELVNSTTRLVPTPTSSIPVV 127

Query: 163 LHERSVIKYVFKISNI 210
            H++ VI    KI+N+
Sbjct: 128 DHKKDVIA-TMKIANL 142


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 124 LYYYFIPLNEQFWYVHIYNLNLGNGFNDF 38
           L Y+++P N +++Y+  + ++ G  +N F
Sbjct: 36  LLYFYVPFNSKYYYIWSFFVSFGVMYNMF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,657
Number of Sequences: 27780
Number of extensions: 288397
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)