Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0477
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.8  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    28   6.8  

>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 SILYYYFIPLNEQFWYVHIYNLNLGNGFNDFHKI 29
           ++L Y FIP N +F  V IY  NL     + H +
Sbjct: 125 NMLSYVFIPTNARFLGVSIYYPNLDKDIKEEHTV 158


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 206 LEILKTYL-ITDLSCKTTREVILTNTINFVLLFYTFKRAILVCT 78
           LE  K Y  + +  CK   +++  N +N +L    F R +L C+
Sbjct: 490 LEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACS 533


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,107
Number of Sequences: 28952
Number of extensions: 240796
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)