Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0476
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   4.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   6.0  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.9  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 23 SHTTSHVDYYQFDYFIR 73
          SH    +DYY +DYF++
Sbjct: 32 SHPNESLDYYIYDYFVK 48


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 78  PIPFWNRFIGNLTIELATSKMIEMLNLPTCLPSVE 182
           PI   ++ +   +IE+ TSK+  +L L   LP+VE
Sbjct: 646 PITDSHKILFKKSIEVITSKIRRLLKLDVYLPTVE 680


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 202 INDFIYCSTDGRQVGRLSISIIFEVAS 122
           +N F YC  D + V   S ++IF   S
Sbjct: 721 VNAFAYCDRDKKNVRNCSFTVIFRDGS 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,874
Number of Sequences: 5004
Number of extensions: 44419
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)