Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0475
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    29   0.84 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    26   4.5  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    26   5.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    26   5.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   7.9  

>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 447 WSWNSAPSGKRRETVPTRSKKLALSTLDMK 536
           W +N A +GK R+      +KL  S+L MK
Sbjct: 157 WGYNGAAAGKGRQVARNELEKLNFSSLKMK 186


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 241 SHLVFSYSESITIYNKTKDSHEGKVTK 161
           S L+   S SI+IYN+  D +  K+T+
Sbjct: 40  SDLLIPNSNSISIYNQIADKYSRKITR 66


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 327 NSSSSPVKNSFMEAVTVSIHDFRPPMLCHL 238
           NSS+SP+K +F+  +++ +     P +C+L
Sbjct: 95  NSSTSPLKKAFLSFISIFV--LNVPAVCYL 122


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 327 NSSSSPVKNSFMEAVTVSIHDFRPPMLCHL 238
           NSS+SP+K +F+  +++ +     P +C+L
Sbjct: 95  NSSTSPLKKAFLSFISIFV--LNVPAVCYL 122


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 384 CLV*CYGFLTSRSRKS*LKFVWSWNSAPSGKRRETVPTRSKK 509
           CLV  YGF    ++ S LKF W+W +    +  +    RSKK
Sbjct: 59  CLV--YGF---PNKVSALKFEWNWQNLGISRYTKDCDFRSKK 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,802
Number of Sequences: 5004
Number of extensions: 49500
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)