Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0475
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical...    29   4.2  
U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.1 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 243 HLILSLATQRASRFTIKLKIATKEKSQNNSWW*DVLFTGGRTSCETAAG 97
           H I      +ASRF+I+L  + + K  NN  W +  F  G   C T+ G
Sbjct: 38  HFIREFCIFKASRFSIELNQSVQFKMFNNGRWSEYSFKNGMI-CITSFG 85


>AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK697.1 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 662 LLTVHNNVPNGY*NTDR--FICNIYFKHFVTLPKLLCDVMNILFFHIQCT*CEFF 504
           L+ +H++  N Y   +   F    Y +H  +L  L  DVM+++   I  T C FF
Sbjct: 41  LIFIHSSFFNKYSTMEFLIFAARSYKEHENSLDTLFLDVMDVVMLFIHTTNCIFF 95


>U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical
           protein C12D5.9 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 351 KCVLYCLLNSSSSPVKNSFME 289
           KCV+  LLN SS+  +NSF+E
Sbjct: 292 KCVIDSLLNPSSTMPRNSFLE 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,834
Number of Sequences: 27780
Number of extensions: 276511
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)