Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0474
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69659-2|CAA93485.1|  167|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81143-7|CAB03517.2|  383|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z69659-2|CAA93485.1|  167|Caenorhabditis elegans Hypothetical
           protein F07C6.2 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 517 IYLLRRI*CLARYWIRFLLKILQPCNESFKPSFILFLKQK 636
           +++L RI C A+Y IRF L+I Q   +S       F+K+K
Sbjct: 120 LWVLIRIPCAAQYLIRFRLEIFQTFQKSLAKVKKNFIKKK 159


>Z81497-6|CAB04082.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 443 LSQVRSGDFDEVYIISSGISNLENSYI 523
           L+QVR GD D    +   + +LENSY+
Sbjct: 355 LNQVRYGDEDLANFLKKHVEDLENSYL 381


>Z81143-7|CAB03517.2|  383|Caenorhabditis elegans Hypothetical
           protein ZK265.5 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = -1

Query: 630 FEKKNKTWLKALVTRLQNL*KKSNPISC-KALNTTKQIYEFSRLLMPELIIYTSSKSPER 454
           +EKK++ W+  L+   QN+       SC  A+ TT     F  L+    +I++   S   
Sbjct: 161 YEKKSRHWIFGLIFVAQNI------FSCTMAVVTTTSGLTFQVLISG--VIFSLFCSAVI 212

Query: 453 T*LRAKNNQIKRIC*SRKPSTSHYSLAFEFRLGANLINFNVSARY 319
             L    NQ + +   R   T++Y+L+  ++L  NL    V  R+
Sbjct: 213 YALVEYFNQQRLMTLERDHRTTNYTLSIRYQLKENLKTLKVMRRF 257


>Z75953-5|CAB00102.2|  604|Caenorhabditis elegans Hypothetical
           protein F10C2.3 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 443 LSQVRSGDFDEVYIISSGISNLENSYI 523
           L+QVR GD D    +   + +LENSY+
Sbjct: 355 LNQVRYGDEDLANFLKKHVEDLENSYL 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,400
Number of Sequences: 27780
Number of extensions: 268599
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)