Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0473
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 493 VKTETTPQQCCSLC 534
           +K E  P +CC++C
Sbjct: 719 MKLEKVPGECCAIC 732


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 65  KRRQNPQDRRNCQKKRRYR 121
           KR+Q+P D  N  KK R R
Sbjct: 559 KRKQDPADGGNSMKKCRAR 577


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 65  KRRQNPQDRRNCQKKRRYR 121
           KR+Q+P D  N  KK R R
Sbjct: 451 KRKQDPADGGNSMKKCRAR 469


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 109 FFLAISSILRVLSPFGVLYITPTDVVSVLL 20
           FFL   S+  ++ P G+L I+   + +VLL
Sbjct: 137 FFLR--SLFAIMLPLGILLISQDVIANVLL 164


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 571 KIIFSQTYNNVNS 609
           K  F +TYNN++S
Sbjct: 26  KSFFGRTYNNISS 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,466
Number of Sequences: 336
Number of extensions: 3234
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)