Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0473
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 0.48
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 28 1.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 28 1.5
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 2.6
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.9
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 25 7.8
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 547 LCKVIVDFKI--IFSQTYNNVNSNLFKWCYFLVLRNSD 654
L V V K+ IFS ++ V++N++ W Y V +SD
Sbjct: 525 LSTVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSD 562
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 48 VIYNTPNGDRTLK-IEEIARKNGDTDKAISNSNPGNAIPSGTTNR---GNVTSNVETTIL 215
+I+N TL+ I+EIAR N + +S + P NAI ++ TS T
Sbjct: 81 LIFNAKTKTFTLEHIDEIARLNALRNPKVSKTVPSNAITQSDNSQISESKSTSQSAVTTN 140
Query: 216 DLRRKD 233
RRK+
Sbjct: 141 STRRKE 146
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 36 TSVGVIYNTPNGDRTLKIEEIARKNGDTD--KAISNSNPGNAIPS 164
T G NTP DR+L I +++R + + +S SNP AI S
Sbjct: 446 TRPGSATNTPQSDRSLDINDLSRSSSYSRHLSHVSLSNPDFAIGS 490
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Frame = +3
Query: 75 RTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTIL----------DLR 224
+ ++I +NGD + SN + NAI + TT++GN N E T+L D+R
Sbjct: 453 KEIQILRHTSQNGDQE---SNESSKNAITTKTTDKGN---NKENTMLNDGSTAPAKNDIR 506
Query: 225 RKDNTNN 245
NTNN
Sbjct: 507 NVINTNN 513
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 57 NTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRKDN 236
+TP D+TL+ NG+ + +N S + +V+S++ T LD +++ +
Sbjct: 268 STPT-DQTLRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLPTLSLDFKQEYS 326
Query: 237 TNN 245
NN
Sbjct: 327 GNN 329
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 18 NSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDK 125
NSNTDTT+ G + + + T E + K+ D+ K
Sbjct: 318 NSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSK 353
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 72 DRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVT 191
D+++ E ARK+ + DKAI ++ + PS T +R +++
Sbjct: 886 DKSVTKAEQARKSIEIDKAIIRNSQSTSRPSLTASRPSLS 925
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 475 FKNIILVKTETTPQQCCSLCFS-WKLCKVIVDFKIIFSQTYNNVNSNLFKWCYFLVLRNS 651
FKN +L E P +L + ++L + ++ Y S+ + CYF +S
Sbjct: 4018 FKNNLLNLLELLPTMTHTLPHNRFRLFFFLSWLHATLAEIYCFTCSSWKEPCYF---DDS 4074
Query: 652 DFYFGLAIGCRML 690
DFYFG I C +L
Sbjct: 4075 DFYFGTKILCNIL 4087
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 47 GYI*YSKRRQNPQDRRNCQKK 109
GYI SKRR +P+D C+++
Sbjct: 81 GYIDLSKRRVSPEDVVKCEER 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,847
Number of Sequences: 5004
Number of extensions: 50413
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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