Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0473
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    29   2.6  
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     29   4.6  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    29   4.6  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    28   8.0  

>03_01_0617 +
           4532651-4532893,4534713-4534939,4535077-4535150,
           4535753-4535809,4535940-4536280,4536979-4537047,
           4537152-4537219,4537404-4539569,4540101-4540178,
           4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 48  VIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRR 227
           VI  T +  +      + + N  T  A+S   PG +IPS  T  G+  +N   T  DL +
Sbjct: 203 VIAPTKSVSKVKLSNSVPKANFSTSPALSPEQPGPSIPSVPT--GSDVNNEVITPFDLNK 260

Query: 228 KDNT 239
            +N+
Sbjct: 261 DENS 264


>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/68 (20%), Positives = 35/68 (51%)
 Frame = +3

Query: 51  IYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRK 230
           + +T +G+  +++++    N D+    +++NP N + S     GN  ++ ++ +   RR 
Sbjct: 165 VSSTASGNM-VELDKSKNINSDSSDTTTDTNPQNGLQSDHQKGGNGKADKQSKVKQPRRN 223

Query: 231 DNTNNTXP 254
            + N + P
Sbjct: 224 QSDNVSKP 231


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 676  QSLSQNKNLNSVTQESNTI*KDCYLHYYKSG 584
            + L +N +L  V    NT  +DC LHY++ G
Sbjct: 1755 EHLLENSSLVKVAAIRNTFLEDCALHYFECG 1785


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 75  RTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETT 209
           RTL    +   +G  +     ++P N+ PS +TN+GN      TT
Sbjct: 844 RTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTT 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,345
Number of Sequences: 37544
Number of extensions: 264552
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)