Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0473
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_13205| Best HMM Match : RCSD (HMM E-Value=4.7) 30 2.0
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28) 29 3.6
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 29 4.7
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_46843| Best HMM Match : IQ (HMM E-Value=0.074) 28 8.2
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = +3
Query: 15 DNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTS 194
DN N+D ++ NT + ++T + + N +D ++ N + + T++ N +
Sbjct: 101 DNKNSDNKNISDNNNTSDNNKTSDNNKTSDNNNTSDNNNTSDNNNTSDNNNTSDNNNTSD 160
Query: 195 NVETTILDLRRKDNTNNT 248
N + D + NNT
Sbjct: 161 NNNS---DNNNTSDNNNT 175
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 DNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTS 194
DN+NT + NT + + T I+ N +D ++ N + + + N + +
Sbjct: 154 DNNNTSDNNNSDNNNTSDNNNTSDNNNISDNNNTSDNNNTSDNNNISDNNNSDNNNSDNN 213
Query: 195 NVE--TTILDLRRKDNTNNT 248
N+ I+D DN N +
Sbjct: 214 NISDNNNIIDNNNSDNNNTS 233
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 18 NSNTDTTSVGVIYNTPNGDRTLK-IEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTS 194
NS ++ TSV ++ +L + E RK + A++ PG+ I + +V
Sbjct: 460 NSVSEVTSVSDEHDVIEATPSLNGVSERKRKTRPENAAVAEKKPGSTIEKDGNSAHDVRD 519
Query: 195 NVETTILDLRRKDNTNNTXPXRL*RT 272
+ ++ K+ NNT R+ +T
Sbjct: 520 EIAQPKMEGSIKEKANNTKGNRMTKT 545
>SB_13205| Best HMM Match : RCSD (HMM E-Value=4.7)
Length = 302
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 57 NTPN-GDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVET 206
NTP D+TL+ E G T K++ N+ P+G T+ TSN ET
Sbjct: 107 NTPAIADQTLRSEVNTPSTGSTSKSVVNT------PNGETSAATQTSNAET 151
>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
Length = 327
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = +3
Query: 18 NSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDT---DKAISNSNPGNAIPSGTTNRGNV 188
NSN+ T + + N + N T + + SNSN + + T+N N
Sbjct: 132 NSNSSTRNNNNSTSNSNNSTRNNNNSTSNSNNSTSNSNNSTSNSNNSSNNNNSTSNSNNS 191
Query: 189 TSNVETTILDLRRKDNTNNT 248
TSN + + N NN+
Sbjct: 192 TSNSNNSTRNNNSSSNNNNS 211
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +3
Query: 15 DNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTS 194
DNSNTD ++ N N + + + + + +S P N S T N + S
Sbjct: 106 DNSNTDNSTS----NNSNPENSTSDNSNSNNSNQDNSNSDDSKPDN---SNTNNSNSDNS 158
Query: 195 NVETTILDLRRKDNTN 242
N + + D DN+N
Sbjct: 159 NTDNSNSDNSTSDNSN 174
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +3
Query: 15 DNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS-NSNPGNAIPSGTT--NRGN 185
DNSN D + +G N +D + S NSN N+ +T N +
Sbjct: 171 DNSNPDNLTSDNSNTDNSGSDNSSSGNFNSDNSTSDNSTSDNSNSDNSTSDNSTSDNSNS 230
Query: 186 VTSNVETTILDLRRKDNTN 242
S + + D +KDN+N
Sbjct: 231 DNSYTDNSTSDNSKKDNSN 249
>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 57 NTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRKDN 236
N+ N + T+ + +R N T +N+ N S T+ ETT K+N
Sbjct: 85 NSSNNNYTINNKNNSRNNNYTISTSNNNYTTNYNKSKNFTTRTKTTTSETTTTPSTTKNN 144
Query: 237 TNNT 248
NNT
Sbjct: 145 RNNT 148
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 108 NGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNT 248
N + + +N+N N + TTN N T+N ++ +N N T
Sbjct: 224 NNNNNNNNNNNNKNNNNNNTTTNNNNTTTNNNNNNINNNNNNNNNTT 270
>SB_46843| Best HMM Match : IQ (HMM E-Value=0.074)
Length = 260
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 15 DNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKA-ISNSNPG 149
D + T+ ++V ++ + + ++ +K+E I+ NGD I NPG
Sbjct: 15 DVTYTNESAVTILRDLEDTEKAVKVETISGPNGDIPSCPIKEENPG 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,886,747
Number of Sequences: 59808
Number of extensions: 343892
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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