Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0473
         (691 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   5.2  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    23   9.1  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   9.1  

>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 123 KAISNSNPGNAIPSGTTNRGNVTSNV 200
           +++ + NP  A+ S +TN  N TSN+
Sbjct: 189 RSLKSGNPSTAVSSSSTN--NNTSNI 212


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 436 YITFKNLNFSVL 471
           Y+TF+N+NF VL
Sbjct: 318 YVTFENVNFVVL 329


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 625  CYFLVLRNSDFYFGL 669
            CY++V  N D +FGL
Sbjct: 1431 CYYIVHGNEDGHFGL 1445


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,145
Number of Sequences: 2352
Number of extensions: 12160
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)