Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0473
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-9|CAB01662.1|  305|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z54271-1|CAA91032.1|  550|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>Z78413-9|CAB01662.1|  305|Caenorhabditis elegans Hypothetical
           protein T01C3.9 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 48  VIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNA--IPSGTTNRGNVTSNVETTILDL 221
           + Y  P  ++  +IEEI R       AIS++  G+A  +PS TT  G+  S + T  +  
Sbjct: 176 ITYCAPIEEQQQRIEEIRRTRASVPVAISDAANGSAEMVPSNTT--GSSGSPMSTAPVPA 233

Query: 222 RRKD 233
            +K+
Sbjct: 234 AKKE 237


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 597 IISLAEYYLKIYNHLAQFPTKT*RTTLLGSCFCFH 493
           + S+ EYYL+ YN+  +FP     T+    C+ F+
Sbjct: 457 LTSITEYYLQRYNYRLKFPHLPLVTSKRAKCYDFY 491


>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 594 ISLAEYYLKIYNHLAQFP 541
           IS+A+YYLK YN+  +FP
Sbjct: 374 ISVADYYLKQYNYKLKFP 391


>Z54271-1|CAA91032.1|  550|Caenorhabditis elegans Hypothetical
           protein F21D5.1 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 51  IYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVET 206
           I+ T N ++TL      +K  DTD A  N++     PSGT N   V +  +T
Sbjct: 477 IFKTTNAEQTLVKPVGIQKMIDTDVAKYNNSRAFIRPSGTENIVRVYAEADT 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,238
Number of Sequences: 27780
Number of extensions: 274961
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)