Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0473
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40740.1 68418.m04944 expressed protein                             28   5.1  
At5g46050.1 68418.m05663 proton-dependent oligopeptide transport...    28   6.7  
At5g52230.1 68418.m06483 expressed protein                             27   8.9  

>At5g40740.1 68418.m04944 expressed protein
          Length = 741

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +3

Query: 84  KIEEIARKNGDTDKAISNSNPGNAIPSGTTN 176
           K+E ++ KN  TD+A+SN+ P N +P+ T++
Sbjct: 549 KMESLSEKNS-TDQALSNARPDN-LPTDTSS 577


>At5g46050.1 68418.m05663 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 582

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 541 WKLCKVIVDFKIIFSQTYNNVNSNLF 618
           WK C  +V +++     Y  ++SNLF
Sbjct: 31  WKACSFVVVYEVFERMAYYGISSNLF 56


>At5g52230.1 68418.m06483 expressed protein 
          Length = 746

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 84  KIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTS 194
           K+E   RKNG  DK I   +    +P G   +  +T+
Sbjct: 15  KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITN 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,814
Number of Sequences: 28952
Number of extensions: 237409
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)