Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0472
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    28   1.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.9  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 674 YFKTYV*SILFLIQRPSVRCFNTSVCMKPLVVNFNLG 564
           Y+ +Y    LFL+  PS++ F++S   K L +NF  G
Sbjct: 217 YWWSYERIRLFLLGHPSLQAFSSSQSTKDLYINFVSG 253


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 66  LLCLY*FSMHFFRSYVCVCMMILLSANLRL 155
           ++CL   S +FF   +C+C++  +S+ L L
Sbjct: 436 IVCLKYCSFYFFIGPICICLLGSISSYLLL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,808
Number of Sequences: 5004
Number of extensions: 58440
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)