Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0472
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2568| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)                  29   2.7  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            29   4.8  
SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)                   29   4.8  
SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)           28   6.3  
SB_26366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_2568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 267 SLKFGKNIITKKKPHLFEERERESENTLYCKPTQFTLKKKIA 392
           S  FG  I TK   H+F  R R+S  T+  +   F LK ++A
Sbjct: 91  SFWFGSGIRTKTCDHMFRSRNRKSAVTIGLQIAPFDLKWRVA 132


>SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 183 NRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNI 70
           N YL T  ++  NL+S  + Y  T  Y    L ++TN+
Sbjct: 41  NLYLATNLYSATNLYSATNLYLATNLYSATNLYLATNL 78



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 198 VFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNI 70
           ++L  N Y  T  +   NL+S  + Y+ T  Y    L ++TN+
Sbjct: 60  LYLATNLYSATNLYLATNLYSATNLYSATNLYSATNLYLATNL 102



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 183 NRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNIIIHSEYLK--RLLAPTNL 22
           N Y  T  ++  NL+S  + Y+ T  Y    L ++TN+ + +       L + TNL
Sbjct: 113 NLYSATNLYSATNLYSATNLYSATNLYSATNLYLATNLYLATNLYSATNLYSATNL 168



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 183 NRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNIIIHSE-YL-KRLLAPTNL 22
           N YL T  ++  NL+   + Y+ T  Y    L ++TN+   +  YL   L + TNL
Sbjct: 29  NLYLATNLYSATNLYLATNLYSATNLYSATNLYLATNLYSATNLYLATNLYSATNL 84



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 183 NRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNI 70
           N YL T  ++  NL+S  + Y+ T  Y    L  +TN+
Sbjct: 95  NLYLATNLYSATNLYSATNLYSATNLYSATNLYSATNL 132



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 198 VFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNI 70
           ++L  N Y  T  ++  NL+S  + Y+ T  Y    L  +TN+
Sbjct: 96  LYLATNLYSATNLYSATNLYSATNLYSATNLYSATNLYSATNL 138



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 183 NRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNIIIHSE-YL-KRLLAPTNL 22
           N Y  T  ++  NL+S  + Y+ T  Y    L  +TN+ + +  YL   L + TNL
Sbjct: 107 NLYSATNLYSATNLYSATNLYSATNLYSATNLYSATNLYLATNLYLATNLYSATNL 162



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 198 VFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNIIIHSE-YL-KRLLAPTN 25
           ++L  N Y  T  ++  NL+S  + Y+ T  Y       +TN  + +  YL   L + TN
Sbjct: 223 LYLATNLYSATNLYSATNLYSATNLYSATNLYSATNFYSATNFYLATNLYLATNLYSATN 282

Query: 24  L 22
           L
Sbjct: 283 L 283



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 195 FLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNI 70
           +L  N YL T  ++  NL+   + Y+ T  Y    L  +TN+
Sbjct: 266 YLATNLYLATNLYSATNLYLATNLYSATNLYSATNLYSATNL 307



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 198 VFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNIIIHSEYLK--RLLAPTN 25
           ++L  N Y  T  +   NL+S  + Y+ T  Y    L  +TN+ + +       L + TN
Sbjct: 30  LYLATNLYSATNLYLATNLYSATNLYSATNLYLATNLYSATNLYLATNLYSATNLYSATN 89

Query: 24  L 22
           L
Sbjct: 90  L 90



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 198 VFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNI 70
           ++L  N Y  T  ++  NL+S  + Y  T  Y    L  +TN+
Sbjct: 72  LYLATNLYSATNLYSATNLYSATNLYLATNLYSATNLYSATNL 114



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 183 NRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTN 73
           N YL T  ++  NL+S  + Y+ T  Y    L  +TN
Sbjct: 222 NLYLATNLYSATNLYSATNLYSATNLYSATNLYSATN 258


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 502 TIIY**QNFTNNILRHLG*LYFNFLKVSLLTRVNCTHAIFFFNVNCV 362
           TI+Y   + +  I+     + +N L+ S     NC  A FF N NC+
Sbjct: 375 TIVYVHHSLSITIVYAHRSVNYNCLRASFFVNHNCLRASFFVNHNCL 421


>SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)
          Length = 563

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 231 SKQITCQPSNYVFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKI 82
           + Q  C+P N  FL       T  F V++L + I S   T  Y+K  + I
Sbjct: 504 NNQANCRPVNPFFLAAVHCPETSLFKVMSLPAAIPSSKLTTKYKKATIFI 553


>SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)
          Length = 187

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 351 YCKPTQFTLKKKIACVQFTRVRSETFKKLKYNYPKCLSILL 473
           + K T+ +  KKI   + T+ R  T KKL+  Y +CL  LL
Sbjct: 88  HVKQTKISAAKKIRA-EVTKERHSTAKKLRKYYIQCLKQLL 127


>SB_26366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -2

Query: 210 PSNYVFLEQNRYLHTKFFTVLNLHSTISSYTHTRNYEKNALKISTNIIIHSEYLKRLLAP 31
           P+N   LE +R+L  +F   + L S  +S  H  N    ++ +  N+   +  +K+ L  
Sbjct: 73  PTNADILESDRFLLARFNAAIKLVSETASSLHDINLLDQSILLRRNLENTTIAIKKTLLS 132

Query: 30  TNLE 19
            ++E
Sbjct: 133 NSIE 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,264
Number of Sequences: 59808
Number of extensions: 382816
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)