Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0472
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine re...    31   1.0  
Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical p...    30   1.8  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    30   1.8  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    29   2.4  
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    29   2.4  
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    29   4.2  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    28   7.4  

>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +3

Query: 195 IHNSRVDRLFVLSDIFATLQRTI*SLKFGKNIITKKKPHLFEERERESENTLYC 356
           ++ +RV R+  L++I + +Q        GK+++ K  PH FE   R + NT++C
Sbjct: 320 VNPNRVYRIIPLAEITSVVQNN------GKSVLAKHPPHCFE--IRTTTNTVFC 365


>AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 7 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 267 FKWFFVKLQKCRSKQITCQPSNYVFLEQN 181
           F++ F   ++ R+KQITC  SN   LEQN
Sbjct: 206 FQYLFNLNERLRAKQITCSLSNRYSLEQN 234


>Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical
           protein C15H11.6 protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 351 YCKPTQFTLKKKIACVQFTRVRSETFKKLKYNYPKC--LSILLVKFCH**IIVNHLYSM 521
           + K T+F  +  + C+  TRV S   + + Y YP+   +S    + CH    ++HL S+
Sbjct: 63  FSKNTEFVERDMLMCLTKTRVMSVVLQHIGYKYPRISGISFSNNRLCH----LDHLSSL 117


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -2

Query: 285 FFQILNFKWFFVKLQKCRSKQITCQPSNYVFLEQN 181
           F +IL F++ F K +K RSK++T   SN   LEQN
Sbjct: 201 FGRIL-FEYMFRKNEKLRSKRLTSSLSNRYSLEQN 234


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
 Frame = -2

Query: 348 VYSHSLSLSLQIGEVFFW**YFFQILN---FKWFFVKLQKCRSKQITCQPSNYV---FLE 187
           VY   + L+  +  + FW  Y    LN   +  F  + + C  + +TC   N+    +  
Sbjct: 505 VYGLEIKLNDVVWSIVFWLGYLNSALNPVIYTVFNREFRICFKRLLTCHHLNHPTQKYTN 564

Query: 186 QNRYLHTKFFTVLNLH----STISSYTHTRNYEKNALKISTN 73
            N Y  T   +   ++    +++ +YT T+N EK++  ++ N
Sbjct: 565 NNSYNSTAIRSTNAVNRVPQTSLGNYTQTQNSEKSSAAVTFN 606


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = -2

Query: 393 MLFFFLM*IVLVCNKVYSHSLSLSLQIGEVFFW**YFFQILNFKWFFVKLQKCRSKQITC 214
           M F F   ++  C  + S S+S +  I  +        +IL F++ F   +K R+KQ+T 
Sbjct: 165 MRFNFSEPVMNYCMAIKSGSVSNAEMISTISLVIQVVGRIL-FEYLFKLNEKLRAKQLTS 223

Query: 213 QPSNYVFLEQN 181
             SN   LEQN
Sbjct: 224 SLSNRYLLEQN 234


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 12  KYILNWSELTIFL-DIQSVLLCLY*F 86
           KYI  W  LT+F+  +QSV LC+Y F
Sbjct: 231 KYIY-WQTLTVFICKLQSVFLCIYLF 255


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 285 FFQILNFKWFFVKLQKCRSKQITCQPSNYVFLEQN 181
           F +IL F++ F K +K RSK++T   SN   L+QN
Sbjct: 201 FGRIL-FEYIFQKNEKLRSKRLTSTLSNRYSLQQN 234


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 457 HLG*LYFNFLKVSLLTRVNCTHAIFFFNVN 368
           H G  YF +  V+L+  VN T +IFF+ VN
Sbjct: 99  HFGNAYFQYFMVTLMA-VNRTTSIFFYFVN 127



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 457 HLG*LYFNFLKVSLLTRVNCTHAIFFFNVN 368
           H G  YF +  V+L++ +N T +IFF+ VN
Sbjct: 327 HFGNAYFQYFMVTLMS-LNRTTSIFFYFVN 355


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 267 SLKFGKNIITKKKPHLFEERERESENT 347
           S K+GK + TK KP++F   E E   T
Sbjct: 385 SHKYGKPVATKSKPYVFGTMENEKWKT 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,574
Number of Sequences: 27780
Number of extensions: 327742
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)