Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0472
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 574 KFTTRGFIHTLVLKHLTDGRCIKNKILYTYVLKYV 678
           ++TT GF+ T     LTD    K  +   ++  YV
Sbjct: 196 RYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYV 230


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  FRSYVCVCMMILLSANL 149
           FR Y  +CM++LL ANL
Sbjct: 87  FRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  FRSYVCVCMMILLSANL 149
           FR Y  +CM++LL ANL
Sbjct: 87  FRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  FRSYVCVCMMILLSANL 149
           FR Y  +CM++LL ANL
Sbjct: 87  FRFYWDLCMLLLLVANL 103


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 574 KFTTRGFIHTLVLKHLTDGRCIKNKILYTYVLKYV 678
           ++TT GF+ T     LTD    K  +   ++  YV
Sbjct: 196 RYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYV 230


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   IFHKVYSKLVGANNLFRYSECIIMF 76
           IF+   +K +G +  F YSE ++ F
Sbjct: 578 IFYDKLNKAIGGSEPFTYSEKMLGF 602


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   IFHKVYSKLVGANNLFRYSECIIMF 76
           IF+   +K +G +  F YSE ++ F
Sbjct: 578 IFYDKLNKAIGGSEPFTYSEKMLGF 602


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 555 SRISQIKIHYKRFHTHASI 611
           S+ SQ  +HY    TH+ +
Sbjct: 363 SKCSQTSVHYSNGQTHSQL 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,261
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)