Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0472
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66060.1 68414.m07498 hypothetical protein contains Pfam PF04...    31   0.56 
At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase, pu...    29   3.0  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   6.8  

>At1g66060.1 68414.m07498 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577); common family
           comprised of At4g09440, At1g66000, At1g66060
          Length = 315

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 178 VLAHKVFHSLKFALNNIIIHTHT*LRKKCIENQYKHNNTL*ISKKIVSSDQFRIY 14
           +L H +F   + +LN  ++H  + +   C+E Q   NN+L I   +V+   F I+
Sbjct: 89  ILLHVIFIIEEASLNLAVVHILSPILISCLEEQVISNNSLKILSMLVNRVAFEIF 143


>At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative contains
           similarity to xyloglucan endotransglycosylase XET2
           GI:8886867 from [Asparagus officinalis]
          Length = 292

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 219 LFVLSDIFATLQRTI*SLKFGKN-IITKKKPHLF 317
           +FVL+   ATL RT     F KN I+T  K H+F
Sbjct: 10  MFVLAAALATLGRTFVEADFSKNFIVTWGKDHMF 43


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 378 KKKIACVQFTRVRSETFKKLKYNYPKCLSILLV 476
           KK++AC     + +E FK + ++Y K + I  V
Sbjct: 37  KKRVACEDTDAIMNEEFKHISFSYNKLVLICCV 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,894
Number of Sequences: 28952
Number of extensions: 264724
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)