Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0470
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IB56 Cluster: Putative uncharacterized protein MAL8P1...    34   3.9  
UniRef50_UPI000050F8E0 Cluster: COG0451: Nucleoside-diphosphate-...    33   5.1  
UniRef50_Q8IBP1 Cluster: Putative uncharacterized protein PF07_0...    33   5.1  
UniRef50_Q24CB0 Cluster: Putative uncharacterized protein; n=2; ...    33   6.7  
UniRef50_A6CIV7 Cluster: Replicative DNA helicase; n=1; Bacillus...    33   8.9  
UniRef50_Q8W9Q8 Cluster: Succinate:cytochrome c oxidoreductase s...    33   8.9  

>UniRef50_Q8IB56 Cluster: Putative uncharacterized protein MAL8P1.49;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL8P1.49 - Plasmodium falciparum
            (isolate 3D7)
          Length = 1466

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 625  FSLFFLNKLNSKRCSVMFLYKILVITYLIIVMIHHFCTH 509
            + LF L K   K+C+ MFL K L +   I   I H CTH
Sbjct: 1010 YYLFMLKKNKVKKCNKMFLRKYLKLLLYIGRNILHICTH 1048


>UniRef50_UPI000050F8E0 Cluster: COG0451:
           Nucleoside-diphosphate-sugar epimerases; n=1;
           Brevibacterium linens BL2|Rep: COG0451:
           Nucleoside-diphosphate-sugar epimerases - Brevibacterium
           linens BL2
          Length = 306

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 94  AAVKRNDIRRYTVSVTARRIILDAVFRQE*RNMEIGSTTVHCTN 225
           AAV  +D   Y V VT  R +LDA  +   R + I STTV+ TN
Sbjct: 68  AAVNADDDELYNVKVTGTRNVLDAFAKA--RIVHISSTTVYSTN 109


>UniRef50_Q8IBP1 Cluster: Putative uncharacterized protein PF07_0086;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PF07_0086 - Plasmodium falciparum
            (isolate 3D7)
          Length = 3429

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 355  QFLNNYLLRYCVIYFSRFYIPCQAQDLNLRNST-PLYIEQITHLNLYSVQLYCQFPYCVI 179
            +F  +Y++R   I+F +F I     D N++N   P+YI      N Y    +  + YCVI
Sbjct: 1595 EFFISYMIRKKNIFFFQFCI-----DNNIKNEMFPIYIPMYIFNNFYQTHFFLYYLYCVI 1649


>UniRef50_Q24CB0 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 873

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +1

Query: 571 ETLRNNVWNSIYSKKITKKF*NPQIKHN*KKIQSE*KSIYWAS 699
           E L + + NS ++ +++  F NPQIK+N  K+ S  + IYWA+
Sbjct: 221 EQLDHYLLNSNFAMQLSDSFVNPQIKYNPFKMYS--RDIYWAT 261


>UniRef50_A6CIV7 Cluster: Replicative DNA helicase; n=1; Bacillus
           sp. SG-1|Rep: Replicative DNA helicase - Bacillus sp.
           SG-1
          Length = 169

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -1

Query: 679 FILIEFFFSYALFGDFKIFSLFFLNKLNSKRCSVMFLYKILVITYLIIVMIHHF 518
           F LI + F+Y+ FG F ++ ++ + KLN KR  V  L   +++T L  +  + F
Sbjct: 81  FDLIIYIFAYSFFGYFLLY-MYDMLKLNYKRTIVFILTFSIIVTGLEAISTYIF 133


>UniRef50_Q8W9Q8 Cluster: Succinate:cytochrome c oxidoreductase
           subunit 3; n=1; Mesostigma viride|Rep:
           Succinate:cytochrome c oxidoreductase subunit 3 -
           Mesostigma viride
          Length = 131

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 682 TFILIEFFFSYALFGDFKIFSLFFLNKLNSKRCSVMFLYKILVITYLIIVMIHH 521
           TF L    +S+     +++FS FFL   +SK  S + L  +  ++Y II  IHH
Sbjct: 41  TFFLFSIIYSFHATRSYELFS-FFLTLEDSKLFSFVELTILFALSYHIINGIHH 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,492,293
Number of Sequences: 1657284
Number of extensions: 11871407
Number of successful extensions: 25152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25132
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)