Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0470
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    28   1.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.5  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   6.0  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   7.9  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   7.9  

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -1

Query: 655 SYALFGDFKIFSLFFLNKLNSKRCSVMFLYKILVITYLIIVMIHHF 518
           ++ +F  F +  L FL +L+S R + +    ++ + YL+ ++++HF
Sbjct: 141 TWIVFALFVLTPLSFLKRLDSLRHTSVI--SLIALCYLVFIVLYHF 184


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = +1

Query: 415 LYGKVEERYPSYDVLDSQRMTKYVILRPL-VQRVCKNDGSLL--LLNTL*QE----FYIE 573
           L  K  ++  S D L+  R+T    L P+ + +  K   ++L  L++ + Q+     +++
Sbjct: 177 LKSKSRQKISSSDPLEDLRLTLTECLNPINIVQAPKECAAILVNLMSNITQDDQKLVFLD 236

Query: 574 TLRNNVWNSIYSKKI 618
            L++ V NSIYS+ +
Sbjct: 237 LLKSKVGNSIYSQLV 251


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 412 YLYGKVEERYPSYDVLDSQRMTKYVILRPL 501
           YL G +  RYP  ++L+  R    +  RPL
Sbjct: 210 YLSGVLNGRYPDREILNLSRFISVMKFRPL 239


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 357 YNSLIIIYLDIVLFTFLDFISPVKRKI 277
           YN L   + +I+ FT L  ISPV   I
Sbjct: 230 YNGLSHFFQNILAFTLLSIISPVAYSI 256


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 652 YALFGDFKIFSLFFLNKLNSKRCSVMFLYKIL 557
           Y+    FK  SLFFLN ++    SV+FL ++L
Sbjct: 396 YSYIERFKQLSLFFLN-ISEDAISVVFLKQML 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,515
Number of Sequences: 5004
Number of extensions: 56921
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)