Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0470
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0701 - 24391404-24392261,24392385-24392867                       30   2.0  
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462...    29   4.7  
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472...    29   4.7  
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    28   6.2  

>01_05_0701 - 24391404-24392261,24392385-24392867
          Length = 446

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 GSTTVHCTNLGV*FVQCTVECCYGDLNLALDRGYKIEK 312
           G   V CT  GV FV+ T  C   D+N  L+R   I K
Sbjct: 104 GDVVVDCTGEGVWFVEATASCTLADVN-NLERPLLIAK 140


>03_05_0833 -
           28045442-28045881,28045961-28046063,28046172-28046203,
           28046299-28046516,28046606-28046721,28047757-28048000,
           28048423-28048510,28048596-28048667,28048758-28048869,
           28049047-28049115,28049627-28049685,28050067-28050325
          Length = 603

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 634 FKIFSLFFLNKLNSKRCSVMFLYKILVITYLIIVM 530
           +K+ S+F  N   ++  SV  LY   +ITY++ ++
Sbjct: 105 YKLISIFVFNLKQAQPYSVFILYWAKIITYIVFLL 139


>01_06_0864 -
           32546696-32546803,32546881-32546961,32547134-32547250,
           32548264-32548338,32548618-32548680,32549122-32549187,
           32549254-32549325,32549403-32549504,32549588-32549765,
           32549871-32549926,32551578-32551688,32551797-32551865,
           32551960-32552068,32552176-32552327,32552398-32552475,
           32554257-32554379,32555527-32555646,32555729-32555809,
           32555881-32556027,32556112-32556190,32557223-32557297,
           32558004-32558113,32558984-32559082,32559700-32559815,
           32559914-32560022,32560098-32560229,32560389-32560591,
           32561428-32561585,32561668-32561797,32562529-32562607,
           32562806-32562829
          Length = 1073

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 517 KNDGSLLLLNTL*QEFY-IETLRNNVWNSIYSKKITKKF 630
           KN G+   +N+L Q  Y I   R +  NS+ +K++TK F
Sbjct: 175 KNQGATCYMNSLLQTLYHIPYFRKHSDNSVSTKELTKSF 213


>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 430 EERYPSYDVLDSQRMTKYVILRPLVQRVCKN 522
           E  Y +++ +DS+  + +  LRPLV   CK+
Sbjct: 404 ENTYGNFEDIDSELFSPFTSLRPLVVACCKD 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,872
Number of Sequences: 37544
Number of extensions: 284899
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)