Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0470
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    27   0.23 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 43  SRVMINLMYFNKIDFLSAAVKRNDIRRYTVSVTARRIILDAVFRQE*RN 189
           +R+   + +FN I   S A+K ND +RY   ++  R   D  +RQ+ +N
Sbjct: 11  ARLFFIIGFFNAI---SGAIKGNDYQRYHQQISGDRFSKD-FYRQDTKN 55


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 346 NNYLLRYCVIYFSRFYIPCQAQDLNLRNSTPL 251
           N +  RYC+    R    C  QD ++  STP+
Sbjct: 194 NPWNTRYCLTPTERLEALCWTQDEDIICSTPI 225


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 346 NNYLLRYCVIYFSRFYIPCQAQDLNLRNSTPL 251
           N +  RYC+    R    C  QD ++  STP+
Sbjct: 141 NPWNTRYCLTPTERLEALCWTQDEDVICSTPI 172


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 74  IRSIFYPLLSNAMILDDTQ 130
           +RSIF+  L + ++LD TQ
Sbjct: 4   VRSIFFLSLVSVVLLDTTQ 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,006
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)