Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0470
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04280.1 68414.m00419 expressed protein                             29   2.2  
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr...    29   3.0  
At5g27290.1 68418.m03258 expressed protein predicted proteins, A...    28   5.2  
At5g53790.1 68418.m06684 hypothetical protein contains Pfam prof...    27   9.0  
At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ...    27   9.0  

>At1g04280.1 68414.m00419 expressed protein
          Length = 480

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 82  DFLSAAVKRNDIRRYTVSVTARRIILDAVFRQE*RNMEIGSTTVHCTNL 228
           DF+ AA ++    R T  +  +R+I   V  +E R +  GS+  HCT +
Sbjct: 120 DFVMAATRKQRFERVTKDLKVKRVISTLV--EEMRVIGSGSSEPHCTEV 166


>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
           protein (AALP) identical to AALP protein GI:7230640 from
           [Arabidopsis thaliana]; similar to barley aleurain
          Length = 358

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +3

Query: 567 YRNITEQRLEFNLFKKNNEKILKSPNK 647
           Y+N+ E +L F++FK+N + +++S NK
Sbjct: 70  YQNVEEMKLRFSIFKENLD-LIRSTNK 95


>At5g27290.1 68418.m03258 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 341

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 219 YKFRCVICSMYSGVLLRR 272
           Y++RC++CS  +G+ +RR
Sbjct: 26  YRYRCIVCSSETGLSIRR 43


>At5g53790.1 68418.m06684 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 567 YRNITEQRLEFNLFKKNNEKILKSPNKA*LKKNSIRMKVYLLG 695
           Y NIT   + +N+F   NEKI+K  +K  +K      +  LLG
Sbjct: 43  YSNIT---ISYNIFNPRNEKIIKITDKVFVKSLPDPEQFVLLG 82


>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
           (PYR4) identical to SP|O04904 Dihydroorotase,
           mitochondrial precursor (EC 3.5.2.3) (DHOase)
           {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 415 LYGKVEERYPSYDVLDSQRMTKYVILRPLVQRV 513
           ++G+V +  PS DV D +++    +L+PL+QR+
Sbjct: 167 VHGEVTD--PSIDVFDREKIFIETVLQPLIQRL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,552
Number of Sequences: 28952
Number of extensions: 259870
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)