Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0469
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   2.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   3.4  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   7.9  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   7.9  

>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 477 WKLL*EK*KIKTVHE*GNSKKVVQAL*FRWETRDDNNTPEVL 602
           W+    K  I TVH+    KK+   L + WE  + N+ P V+
Sbjct: 149 WRRKLGKCSIFTVHDPDIQKKIKSILSYLWELSNTNDPPHVI 190


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 365 IQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKN 505
           I N++ E      NP   +E R  ++KE + K R  ++ +  R   N
Sbjct: 416 IDNNLYEKARLIANPFSYEEHRQKIVKERLEKQRASKIRSQNRPKVN 462


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 583 IILQKYCANVDPNLYQRNVGISSL 654
           +IL+KY  NVDP+L  R  G+ +L
Sbjct: 117 LILKKYLLNVDPSLSFRAEGLFTL 140


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 540 LF*SFLIHELSLFFISLTRVSNCLFLFFDINSFI 439
           LF  F   +L+++++   ++S+C   +FD N+ I
Sbjct: 219 LFQGFYYMQLNVYYVLYEKMSHCEIQYFDFNTDI 252


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -2

Query: 504 FFISLTRVSNCLFLFFDINSFIKLSRSSSVMGG 406
           FFI   ++ +C++LF+ I++ + +S S  ++GG
Sbjct: 121 FFIRFGKLGHCVYLFYCISTNVLVS-SLLLLGG 152


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 516 ELSLFFISLTRVSNC-LFLFFDI 451
           +LSLF + LTR+ N  L+L +DI
Sbjct: 595 QLSLFILLLTRLENMGLYLLYDI 617


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 405 LVDLEPFSTI*FWMFTVFFSLVLCTICEDNESTTSTLVVKRHTGAFF*IFIRCES-LLNN 229
           ++  E F  I  W++++   L  CT     E+ +     +R   AF  IFI C S +L+ 
Sbjct: 232 MIQYEVFPAI--WVYSICHLLKQCTSVTTYENASKARFFRRMLNAF--IFIFCASPMLHY 287

Query: 228 LGDV 217
           L ++
Sbjct: 288 LSNI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,206
Number of Sequences: 5004
Number of extensions: 55707
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)