Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0469
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    29   4.7  
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478     28   8.2  

>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 237 KAIHNV*RFKKTHLYVSLPQVLMSLIHYLHKLCKEPKR 350
           K I N+   +K    +   Q    L+ +LH LCKE KR
Sbjct: 790 KIIQNIRSLQKLRTLMFFGQNNTMLLRFLHTLCKESKR 827


>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
          Length = 209

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 276 LYVSLPQVLMSLIHYLHKLCKEPKRKIR*TSKIIWLKMVLNPPIL 410
           LY  +P++ +  ++++ +LCK     +R   K +   ++  PP L
Sbjct: 38  LYEDVPEMPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPAL 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,329
Number of Sequences: 37544
Number of extensions: 274769
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)