Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0469
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)                 30   2.1  
SB_33263| Best HMM Match : Hydrolase (HMM E-Value=0.052)               29   4.8  
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)                       28   6.3  
SB_9394| Best HMM Match : Drf_GBD (HMM E-Value=0.017)                  28   6.3  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              28   8.4  
SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)                 28   8.4  

>SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)
          Length = 418

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 359 VNIQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVRE 496
           V I NH++ N +K+      D ER+ ++ +  +  R +Q  TLV E
Sbjct: 45  VEIANHLLRNCTKNDKFNKEDHERNIVMADNATSPRGQQCPTLVEE 90


>SB_33263| Best HMM Match : Hydrolase (HMM E-Value=0.052)
          Length = 335

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 410 PMTDEERDNLIKELMSKNRNRQLETLVREMKNKDSS 517
           P TDE+R+ L KE+M +   + L+ LV   ++   S
Sbjct: 145 PFTDEDRERLRKEVMEEMHKQALKILVLACRSLSDS 180


>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
          Length = 760

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 566 PSKL*CLNNFFRVSSFMNCLYFSFLLQEFPTVC 468
           PS++ CLN F  V S M CL  +F+L     VC
Sbjct: 426 PSRMMCLNTFILVPSRMMCLN-TFILVPSRVVC 457


>SB_9394| Best HMM Match : Drf_GBD (HMM E-Value=0.017)
          Length = 500

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 353 NTVNIQNHMVENGS-KSTNPPMTDEERDNLIKELMSKNRNRQLETLV 490
           N +N+QN M E  + +  +  + DEE +    E+ +KN  RQLE ++
Sbjct: 278 NYINVQNVMDEFVTLRERSKYLRDEESEANQTEMRTKNTERQLELIL 324


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 398  STNPPMTDEERDNLIKEL 451
            +TNPP+ DEE  NL K+L
Sbjct: 1815 NTNPPLVDEESFNLAKKL 1832


>SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)
          Length = 326

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 344 KEKNTVNIQNHMVE--NGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNK 508
           K  + VN+ +++V+    S +    MTDEE DN +  ++ K    +++  ++++  K
Sbjct: 85  KRHDLVNVMSYLVKPVKDSITVTVHMTDEEMDNFVFAIVPKKTVSKMQKELQDLVTK 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,566
Number of Sequences: 59808
Number of extensions: 354005
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)