Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0469
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z93381-2|CAB07605.1|  374|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical
           protein C16C8.12 protein.
          Length = 179

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 374 HMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKDSS*MRKL 532
           H+ E+     N    + +    I +L++KN ++ LETL++  K +D   M+ L
Sbjct: 60  HVQESLMSELNSVKNELKHAKSINDLIAKNADKNLETLLKIQKTQDQIMMKLL 112


>Z93381-2|CAB07605.1|  374|Caenorhabditis elegans Hypothetical
           protein F28G4.2 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -2

Query: 525 LIHELSLFFISLTRVSNCLFLFFDINSFIKLS-RSSSVMGGLVDLEPFSTI*FWMFTVFF 349
           L H  ++ FI  T +S  + L FD  + + L  +  +++ GLVDL+ FST+      V +
Sbjct: 89  LNHICNIQFIPNT-LSRLVALAFDREAQMALKEKHPNIVNGLVDLKKFSTVPENHGYVTY 147

Query: 348 SLVLCT 331
           SL L T
Sbjct: 148 SLALHT 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,287
Number of Sequences: 27780
Number of extensions: 299817
Number of successful extensions: 820
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)