Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0469
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   2.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.5  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 472 TVGNSCKRNEK*RQFMNEETLKKLFK 549
           T  NSCK++ K  Q   +  L K+F+
Sbjct: 107 TESNSCKKSSKLLQCFIDNNLMKIFE 132


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 207 PLRKHPLNYLKAIHNV 254
           P +K+P    KA+HNV
Sbjct: 443 PRKKYPFELEKALHNV 458


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 350 KNTVNIQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQ 475
           K   N QN   +NG++       D +++   +    +N NRQ
Sbjct: 479 KQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQ 520


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 156 IFNRNYNKRIKMNSMRI 206
           I N NYNK++  N + I
Sbjct: 323 IHNNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,129
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)