Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0469
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19180.1 68417.m02830 nucleoside phosphatase family protein /... 30 1.3
At4g15020.1 68417.m02308 expressed protein contains Pfam profile... 30 1.7
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 29 3.0
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 29 3.0
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 28 5.2
At5g55320.1 68418.m06894 membrane bound O-acyl transferase (MBOA... 28 6.8
At4g01915.3 68417.m00254 expressed protein 28 6.8
At3g58440.1 68416.m06513 meprin and TRAF homology domain-contain... 27 9.0
>At4g19180.1 68417.m02830 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|O18956
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Bos taurus}; contains Pfam
profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 740
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2
Query: 531 SFLIHELSLFFISLTRVSNCLFLFFDINSFIKLSRSSSVMGGLV 400
S LI L L +L+RVSNCL FF S++ L R +S V
Sbjct: 589 SILILSLLLLLCALSRVSNCLPRFFR-KSYLPLFRHNSTSASSV 631
>At4g15020.1 68417.m02308 expressed protein contains Pfam profile
PF04937: Protein of unknown function (DUF 659)
Length = 289
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 338 RTKEKNTVNIQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRN 469
RTK++ T + + ENGS S N + + DNLI +S +N
Sbjct: 31 RTKQR-TYRSKKNAFENGSASNNVDLIGRDMDNLIPVAISSVKN 73
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 362 NIQNHMVENGSKSTNPPMTDEERDNLIKELMS 457
+++ + ENG P DEER L+KEL S
Sbjct: 338 SVKEFVYENGWSKNWPLAVDEERSKLLKELQS 369
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 362 NIQNHMVENGSKSTNPPMTDEERDNLIKELMS 457
+++ + ENG P DEER L+KEL S
Sbjct: 338 SVKEFVYENGWSKNWPLAVDEERSKLLKELQS 369
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 410 EDWWI*NHFQPYDFGCLPYFSLWFFAQFVKIMNQRHQ 300
ED+ N F PYD C Y S+W + N +Q
Sbjct: 520 EDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQ 556
>At5g55320.1 68418.m06894 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related similar to wax
synthase [Simmondsia chinensis] GI:5020219 [EC 2.3.1.75]
Length = 339
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2
Query: 531 SFLIHELSLFFISLTRVSNCLFLFFDINSFIKLSRSSSVMGGLVDLEPFSTI*FWMFTVF 352
S + HE+ F+I+ + + LFF ++ ++ ++ V P + WMFT+
Sbjct: 237 SGVAHEVVFFYITRAMPTGEVALFFLLHGVCTVAEVAAKRTAFVRRWPVRPVVSWMFTIA 296
Query: 351 F 349
F
Sbjct: 297 F 297
>At4g01915.3 68417.m00254 expressed protein
Length = 106
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 365 CLPYFSLWFFAQFVKIMNQRHQHLW 291
CL YF++ FF + I +H+ LW
Sbjct: 53 CLAYFTVQFFHLWYYISRSKHRDLW 77
>At3g58440.1 68416.m06513 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 601
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 447 SFIKLSRSSSVMGGLVDLEPFSTI*FWMFTVFFSLVLCTICEDNE 313
SF+K +++ +DLEP S W V FS+ L +C + +
Sbjct: 41 SFLKGAKNDRYFSVYLDLEPGSLPPGWRREVKFSITLDNVCPNTD 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,098
Number of Sequences: 28952
Number of extensions: 260539
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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