Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0468
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   1.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.7  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 303 IVGDAFKRWQHYILVTAATIFSLFNCCQFSI 211
           +V    K  Q+ + +TA  +FS+ N   FSI
Sbjct: 243 VVTSVLKLMQNKLEITACRLFSIDNALLFSI 273


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 303 IVGDAFKRWQHYILVTAATIFSLFNCCQFS 214
           ++  A K  Q+ + +TA   FS+ N   FS
Sbjct: 340 VISSALKLSQNELEITACKFFSIDNALLFS 369



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 303 IVGDAFKRWQHYILVTAATIFSLFNCCQFSI 211
           I+  A K  Q  + +TA   FS+ N    SI
Sbjct: 393 IISSALKLSQSELEITACKFFSIDNALLLSI 423


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 622 SFSVNDKEAYFSNAT 666
           +F VN+K++YF  AT
Sbjct: 127 TFFVNEKQSYFHIAT 141


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 544 VKIKNYTYNNVLIHIMTWFYFV 479
           +++  Y Y N LI+++  F+F+
Sbjct: 213 IQVVPYCYINCLIYLIGGFWFM 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,490
Number of Sequences: 336
Number of extensions: 2751
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)