Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0468
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    30   0.28 
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    30   0.28 
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    27   2.6  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   4.5  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   6.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 619 YFHLFQQIDFYYGKKGLIYWWPKVYVKIKNYTYNNVLIHIMTWFYFV 479
           +FH    +   +G  G  YW PK++       YN  L  I  W  F+
Sbjct: 383 HFHYVLSMGALFGLCGAYYWSPKMF----GLMYNETLASIQFWILFI 425


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 565 RSDLFCHNRNLF--VETSESISFSVNDKEAYFSNATMYLIKKYISSY 699
           +S+++  NRNL   ++T E IS  V DKE YFS+    LI+  I  Y
Sbjct: 375 QSEIYSTNRNLLSVLQTVEQISKEV-DKE-YFSSTNHQLIRSEIGEY 419


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 80  LGDRPVIGSSRCVPERXGLLSKGLTAFPK*SDLIQ 184
           LGDRPV+G      E  GL  K     P+  DL++
Sbjct: 483 LGDRPVVGDLVYSTESNGLSQKSPIVDPEAPDLLE 517


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 559 TSRSDLFCHNRNLFVETSESISFSVNDKEAYFSNATMYLIKKYI 690
           T+RS +     +  +   + +SFSVN      + + +Y++ KY+
Sbjct: 191 TNRSRIIKETSSYLLSQEDQLSFSVNSNGFTNACSVLYMLDKYL 234


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 577 KGLIYWWPKVYVKIKNYTYNNVLIHIMTWF 488
           K LI W P + +  K Y+ +  L+++  W+
Sbjct: 579 KDLISWLPDLSILYKLYSESGALLNLYDWY 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,854
Number of Sequences: 5004
Number of extensions: 43024
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)