Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0468
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 279 WQHYILVTAATIFSLFNCCQFSIMLGAGXLKN*IRSLYL 163
           WQ   L+    + S+     F I+  AG L+N  RS YL
Sbjct: 399 WQMICLIVVIALVSIIMYIAFIILQYAGLLRN--RSEYL 435


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 541 KIKNYTYNNVLIHIMTWFY 485
           K+K Y +NN ++HI+   Y
Sbjct: 90  KLKIYKWNNQILHILWTSY 108


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 541 KIKNYTYNNVLIHIMTWFY 485
           K+K Y +NN ++HI+   Y
Sbjct: 73  KLKIYKWNNQILHILWTSY 91


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 422 LFISLNIYLSNKRSVSFPLNKIKPRHYVYQHVIIS 526
           +F + ++Y   +  V   L+ I PR+Y+Y ++ IS
Sbjct: 501 IFQAPSLY-DTREPVDQQLSGISPRNYMYPNIDIS 534


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 622 SFSVNDKEAYFSNAT 666
           +F VN+K++YF  AT
Sbjct: 98  TFFVNEKQSYFHIAT 112


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 622 SFSVNDKEAYFSNAT 666
           +F VN+K++YF  AT
Sbjct: 98  TFFVNEKQSYFHIAT 112


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 622 SFSVNDKEAYFSNAT 666
           +F VN+K++YF  AT
Sbjct: 37  TFFVNEKQSYFHIAT 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,476
Number of Sequences: 438
Number of extensions: 2964
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)